Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  457 bits (1177), Expect = e-133
 Identities = 266/496 (53%), Positives = 339/496 (68%), Gaps = 32/496 (6%)

Query: 6   KLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQ----IDQINWSAVWGGCILGSLRGQAL 61
           K+L+I+DD   R +L+VIL F+ E      S +    +  +  S V  G +LG++  +  
Sbjct: 6   KILLIDDDRDRRRDLTVILNFLSEDHLACSSDEWQDAVAGLESSRVVNGVMLGNVSSRGG 65

Query: 62  SEQLIQSLTKAN-HIPLLVANKQPYSLEEFPNYVGE-----LDFPLNYPQLSDALRHCKE 115
           + +LI+ + K + ++PLL+  +   +  ++P+ V       L+ P +Y +L D+L   + 
Sbjct: 66  AAELIKQMGKWDENVPLLLIGEPAPA--DWPDDVRRRVLTSLEMPPSYNKLLDSLHRAQI 123

Query: 116 FLGRKGFQVLATA---RKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKE 172
           +  R+ +    +    R+  LFRSLVG S  +Q VR ++EQV+ TEA+VLILGESGTGKE
Sbjct: 124 Y--REMYDQAKSRGRQREPNLFRSLVGTSRAVQHVRQMMEQVADTEASVLILGESGTGKE 181

Query: 173 VVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGT 232
           VVARN+HYHS RR GPFVP+NCGAIPAELLESELFGHEKGAFTGAITAR GRFELAEGGT
Sbjct: 182 VVARNLHYHSKRRQGPFVPVNCGAIPAELLESELFGHEKGAFTGAITARSGRFELAEGGT 241

Query: 233 LFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFRE 292
           LFLDEIGDMP+ MQVKLLRVLQER FERVG N T  A+VR+IAATH++LE+MI+   FRE
Sbjct: 242 LFLDEIGDMPLPMQVKLLRVLQERTFERVGSNRTQNADVRIIAATHKDLEKMIEEGTFRE 301

Query: 293 DLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGN 352
           DLYYRLNVFPIEM  LR+R++DIPLL+ EL++RME E    I F   AI S+  HDWPGN
Sbjct: 302 DLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHDWPGN 361

Query: 353 VRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFA 412
           VRELANLVERM I++P  ++ V  LP K+R+ D  + Q   S    +EE+          
Sbjct: 362 VRELANLVERMAIMHPYGVIGVMELPKKFRHVDDDDEQYATSLHDEMEERAA-------- 413

Query: 413 EDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGM 472
                  P   VP+  A   LP EG++LKE L +LE  LI+QALE  GGVVARAA+ L +
Sbjct: 414 ----ISAPM-VVPEAQA--MLPVEGLDLKEYLGNLEQGLIHQALEDAGGVVARAAERLRI 466

Query: 473 RRTTLVEKMRKYNMQR 488
           RRTTLVEKMRKY M R
Sbjct: 467 RRTTLVEKMRKYGMNR 482