Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., nitrogen assimilation regulatory protein from Sinorhizobium meliloti 1021

 Score =  294 bits (752), Expect = 5e-84
 Identities = 194/490 (39%), Positives = 275/490 (56%), Gaps = 32/490 (6%)

Query: 5   AKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGS--LRGQALS 62
           A +LV +DDAAIR  L+  L   G     I S       W A   G ++ +  +     +
Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62

Query: 63  EQLIQSLTKAN-HIPLLVANKQPYSLEEFP-NYVGELDFPLNYPQLSDALRHCKEFLGRK 120
             L+  + KA   +P+LV + Q   +     +  G  D+    P+  D      E +G  
Sbjct: 63  FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDY---LPKPFDLT----ELIGII 115

Query: 121 GFQVLATARKNTLFRS-------LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEV 173
           G  +    R+ +           LVG+S  +QE+  ++ ++  T+  ++I GESGTGKE+
Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKEL 175

Query: 174 VARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTL 233
           VAR +H +  RRNGPFV IN  AIP +L+ESELFGHEKGAFTGA T   GRFE AEGGTL
Sbjct: 176 VARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTL 235

Query: 234 FLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFRED 293
           FLDEIGDMPM  Q +LLRVLQ+  +  VGG + I+++VR++AAT+++L++ I+   FRED
Sbjct: 236 FLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFRED 295

Query: 294 LYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNV 353
           LYYRLNV P+ +P LRDR +DIP L++  + + E EG     F   A+  M  H WPGNV
Sbjct: 296 LYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNV 355

Query: 354 RELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAE 413
           REL NLV R+  LYP  ++    +  + R S+IP+   E +   S        +E     
Sbjct: 356 RELENLVRRLTALYPQDVITREIIENELR-SEIPDSPIEKAAARSGSLSISQAVE----- 409

Query: 414 DFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMR 473
               E  +++        ALPP G+    +LA++E  LI  AL A  G   +AAD+LG+ 
Sbjct: 410 ----ENMRQYFASFG--DALPPSGL-YDRVLAEMEYPLILAALTATRGNQIKAADLLGLN 462

Query: 474 RTTLVEKMRK 483
           R TL +K+R+
Sbjct: 463 RNTLRKKIRE 472