Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  521 bits (1341), Expect = e-152
 Identities = 283/488 (57%), Positives = 355/488 (72%), Gaps = 14/488 (2%)

Query: 1   MQSLAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLRGQA 60
           MQ+  ++L++ +       LS ILEF+GEQ E ++ + ++Q      +   I+  L    
Sbjct: 2   MQTDQRILLVGNQTERIGRLSCILEFLGEQLETLDPSGLEQAVKETRFRALIV-DLESLP 60

Query: 61  LSEQLIQSLTKANHIPLLVANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKEFLGRK 120
           L EQ+    TK    P+L+        +   N +G ++ P NYPQL++ L  C+ F  ++
Sbjct: 61  L-EQVKVFATKIPWQPILLLGATD---DLSANLIGSVEEPFNYPQLTELLHFCQVFGQQR 116

Query: 121 GFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHY 180
              V  +  +  LFRSLVG+S GI  VRHLI QV+ ++A VL+LG+SGTGKEVVARNIHY
Sbjct: 117 RPDVPTSGNQTKLFRSLVGRSEGIVNVRHLISQVAPSDATVLVLGQSGTGKEVVARNIHY 176

Query: 181 HSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGD 240
            S RR+GPF+P+NCGAIP ELLESELFGHEKG+FTGAI++RKGRFELAEGGTLFLDEIGD
Sbjct: 177 LSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGD 236

Query: 241 MPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNV 300
           MP++MQVKLLRVLQER FERVGG+  I+ANVRV+AATHRNLE MI+  +FREDL+YRLNV
Sbjct: 237 MPLAMQVKLLRVLQERVFERVGGSKPIQANVRVVAATHRNLENMIENNEFREDLFYRLNV 296

Query: 301 FPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRELANLV 360
           FPIEMP+L +R +DIPLLLQEL++R+  EG   + FT RAI S+ EHDW GNVREL+NLV
Sbjct: 297 FPIEMPSLSERCEDIPLLLQELVSRVFNEGRGKVRFTQRAIESLKEHDWSGNVRELSNLV 356

Query: 361 ERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEP 420
           ER+ ILYP  LVDVN LP KYR+ D+PE+  E S     E  ERD L  IF +D    EP
Sbjct: 357 ERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEVSE----EMLERDALASIFNDD----EP 408

Query: 421 QEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEK 480
            E +P+   P  LPPEGVNLK+LLA+LE+++I QALE Q  VVARAA+MLG+RRTTLVEK
Sbjct: 409 VE-IPETRFPSELPPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEK 467

Query: 481 MRKYNMQR 488
           MRKY M +
Sbjct: 468 MRKYGMSK 475