Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) from Rhodospirillum rubrum S1H

 Score =  276 bits (707), Expect = 9e-79
 Identities = 188/511 (36%), Positives = 262/511 (51%), Gaps = 64/511 (12%)

Query: 4   LAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGG--------CILGS 55
           ++ +LV +DD  IR  LS  L   G +   + ST      WS V  G         I+  
Sbjct: 1   MSTILVADDDRGIRTVLSQALTRAGHE---VRSTGTASTLWSWVTDGQGDLVITDVIMPD 57

Query: 56  LRGQALSEQL------IQSLTKANHIPLLVANK-----------QPYSLEEFPNYVGE-L 97
             G  L  ++      ++ +  +    LL A K           +P+ L E  N V   L
Sbjct: 58  ENGLDLIPRIKKIRPDLRIVVMSAQNTLLTAVKATERGAFEYLPKPFDLTEVVNVVRRAL 117

Query: 98  DFPLNYPQLSDALRHCKEFLGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTT 157
             P   P   D      E L                   L+G+S  +QE+   + ++  T
Sbjct: 118 SLPRGNPTEGDHASEEDERL------------------PLIGRSPAMQEIYRTLARLMNT 159

Query: 158 EANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGA 217
           +  V+I GESGTGKE+VAR +H +  RRNG FV +N GAIP EL+ESELFGHEKGAFTGA
Sbjct: 160 DLTVMINGESGTGKELVARALHDYGKRRNGSFVAVNMGAIPRELIESELFGHEKGAFTGA 219

Query: 218 ITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAAT 277
                GRFE A+GGTLFLDEIGDMP+  Q +LLRVLQE  +  VGG  T++ANVR+IAAT
Sbjct: 220 HARSAGRFEQADGGTLFLDEIGDMPLEAQTRLLRVLQESEYTTVGGRQTLRANVRIIAAT 279

Query: 278 HRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRM-EAEGAQPICF 336
           HR+L ++I    FREDL+YRLNV P+ +P LR+R++DIP L +  +  + E +G  P   
Sbjct: 280 HRDLRQLIHQGLFREDLFYRLNVVPLRLPPLRERVEDIPELTRHFLHAVAEHDGLPPKVL 339

Query: 337 TPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRF 396
              A+  + +H W GNVREL NLV R+  LY   ++ V  +  +   S  P         
Sbjct: 340 EAPAMERLKKHRWSGNVRELENLVRRLAALYSQEVIGVEVIEAELSSSAPPILDEGDESA 399

Query: 397 SSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQAL 456
             +  +    L   F                   +ALPP G++ + +  ++E  LI+  L
Sbjct: 400 EGLSTKVERHLRHYFEAH---------------GEALPPAGLH-ERISREVERPLISLCL 443

Query: 457 EAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
           EA  G   +AA +LG+ R TL +K+R  ++Q
Sbjct: 444 EATRGNQIKAAQLLGLNRNTLRKKIRDLDIQ 474