Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  259 bits (661), Expect = 2e-73
 Identities = 151/342 (44%), Positives = 207/342 (60%), Gaps = 38/342 (11%)

Query: 144 IQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLE 203
           + ++R  I +V+ ++A VLI GESGTGKE+VA ++HY S R  GPF+ +NC AIP  LLE
Sbjct: 153 MMDLRQTIAKVARSQATVLIQGESGTGKELVAASVHYGSPRATGPFIRVNCAAIPEGLLE 212

Query: 204 SELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGG 263
           SE FGHEKGAFTGA T R+GRFE AE GTLFLDEIG++  ++QVKLLRVLQER +ERVGG
Sbjct: 213 SEFFGHEKGAFTGAATRRRGRFEQAEHGTLFLDEIGEISPALQVKLLRVLQEREYERVGG 272

Query: 264 NSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIPLLLQELM 323
           +  I A+VR++AAT+R+LE MI    FR+DL++RLNV  ++   LRDR +DI LL    +
Sbjct: 273 SEPIPADVRIVAATNRDLEAMIREGTFRQDLFFRLNVVALKTIPLRDRPEDIRLLADHFL 332

Query: 324 TRMEAEGAQPI-CFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVNHLPTKYR 382
            R  A+    I  F P A++ M+ + WPGNVREL N VER V++   +++  + LP    
Sbjct: 333 GRFAADNNVVIRGFDPAALDCMLAYPWPGNVRELVNAVERAVVMSTGNVILRDDLPENII 392

Query: 383 YSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKE 442
             +   F                                E +PD    +A+ P    L+E
Sbjct: 393 CGERAAF------------------------------VSELLPD---GEAIRP----LRE 415

Query: 443 LLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEKMRKY 484
           + ++ E  +I  AL   GG  AR A  LG+ R  L+ K+++Y
Sbjct: 416 MASEFETRVIRLALARNGGNRARTAIQLGISRRALLYKLQEY 457