Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., nif-specific transcriptional activator NifA from Rhodopseudomonas palustris CGA009

 Score =  263 bits (672), Expect = 1e-74
 Identities = 159/372 (42%), Positives = 222/372 (59%), Gaps = 25/372 (6%)

Query: 129 RKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGP 188
           RK      +VG+S  I+++   +  ++ +++ VL+ GESGTGKE++A+ IH  S R NGP
Sbjct: 221 RKRVKVDGIVGESPAIRKLLAKVSIIAKSQSPVLLRGESGTGKELIAKAIHELSARANGP 280

Query: 189 FVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVK 248
           F+ INC A+P  +LESELFGHEKGAFTGAI +RKGRFELA+ GTLFLDEIG++  S Q K
Sbjct: 281 FIKINCAALPESVLESELFGHEKGAFTGAIASRKGRFELADKGTLFLDEIGEISASFQAK 340

Query: 249 LLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPAL 308
           LLRVLQE+ FERVGGN TIK NVR++AAT+RNLEE +  ++FR DLYYR+NV P+ +P L
Sbjct: 341 LLRVLQEQEFERVGGNQTIKVNVRIVAATNRNLEEAVARKEFRADLYYRINVVPMILPPL 400

Query: 309 RDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRELANLVERMVILYP 368
           RDR  DIPLL  E +     E  + + F   A++ +    +PGNVREL N V R   L  
Sbjct: 401 RDRPSDIPLLASEFLKNFNKENGRELAFESHALDLLKACSFPGNVRELENCVRRTATLAM 460

Query: 369 NSLVD-----------VNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNF 417
              +            ++ +  K      PE +P P     V  ++  V           
Sbjct: 461 GPEIRDSDFACHQDECLSAILWKGHAEPAPE-RPRPEIPLQVLPRKAPV---------EI 510

Query: 418 EEPQEFVPDID--APQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRT 475
             P+E V   D  AP  +  E  + +  +++ E  LIN A+E  G V A+AA +LG+   
Sbjct: 511 VHPREPVASADDFAPAPVRSEMPSDESNMSERE-RLIN-AMERAGWVQAKAARILGLTPR 568

Query: 476 TLVEKMRKYNMQ 487
            +   ++K+N++
Sbjct: 569 QIGYALKKHNIE 580