Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  516 bits (1328), Expect = e-151
 Identities = 277/491 (56%), Positives = 356/491 (72%), Gaps = 19/491 (3%)

Query: 1   MQSLAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLRGQA 60
           MQ+  ++L++ + +     LS + EF+GEQ E++   +++    +  +   ++     +A
Sbjct: 2   MQTDQRILLVGNQSERINRLSCVFEFLGEQVELLAVDRLESRMSNTRYRALVIAQ---EA 58

Query: 61  LSEQLIQSLTKA---NHIPLLVANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKEFL 117
            S+ L+QS+  +     I LL +N    +     N +G ++ PLNYPQL++ L  C+ F+
Sbjct: 59  QSKTLLQSIATSMPWQPILLLGSNGDVTA----GNVLGCIEEPLNYPQLTELLHFCQVFV 114

Query: 118 GRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARN 177
             K   +  +  +  LFRSLVG+S GI +VRHLI QV+ ++A VL+LG+SGTGKEVVARN
Sbjct: 115 QAKRPDIPTSGNQTKLFRSLVGRSEGIAQVRHLINQVAGSDATVLVLGQSGTGKEVVARN 174

Query: 178 IHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDE 237
           IHY S RR+GPF+P+NCGAIP ELLESELFGHEKG+FTGAI+ARKGRFELAEGGTLFLDE
Sbjct: 175 IHYISDRRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISARKGRFELAEGGTLFLDE 234

Query: 238 IGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYR 297
           IGDMP+ MQVKLLRVLQER FERVGG+  I  NVRVIAATHR LE MI   +FREDL+YR
Sbjct: 235 IGDMPLQMQVKLLRVLQERVFERVGGSKPIHTNVRVIAATHRELETMIANGEFREDLFYR 294

Query: 298 LNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRELA 357
           LNVFP+EMPAL +R DDIPLLLQEL++R+  EG   + FT RAI S+ EH W GNVREL+
Sbjct: 295 LNVFPVEMPALCERKDDIPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHSWSGNVRELS 354

Query: 358 NLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNF 417
           NLVER+ ILYP  LVDVN LP KYR+ D+PE+Q + S     EE ERD L  IF+++   
Sbjct: 355 NLVERLTILYPGGLVDVNDLPLKYRHIDVPEYQVQVSE----EELERDALASIFSDEVAV 410

Query: 418 EEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTL 477
           +     +P+   P  LPPEGVNLK+LLA+LE+++I QAL+ Q  VVARAA+MLG+RRTTL
Sbjct: 411 D-----IPESRFPSELPPEGVNLKDLLAELEIDMIRQALDQQDNVVARAAEMLGIRRTTL 465

Query: 478 VEKMRKYNMQR 488
           VEKMRKY M +
Sbjct: 466 VEKMRKYGMSK 476