Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  245 bits (626), Expect = 2e-69
 Identities = 164/418 (39%), Positives = 232/418 (55%), Gaps = 26/418 (6%)

Query: 4   LAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSA-----VWGGCILGSLRG 58
           +A+LL+++DDA I   L++ L   G +    +S +   + + A     V     +G + G
Sbjct: 1   MAELLLVDDDADILKLLALRLATAGHRVRTADSGEQALVMFQAQRPQLVITDLKMGGMDG 60

Query: 59  QALSEQLIQSLTKANHIPLLVANKQPYSLEEFPNYV-GELDFPLNYPQLSDALRHCKEFL 117
            AL +++ +       I L      P +++     V G L  P +   L + +       
Sbjct: 61  LALFDEIQRRAPTLPVIVLTAHGTIPEAVDATRRGVFGFLTKPFDGKALLEQVEQALRLA 120

Query: 118 GRKGFQVLATARKNTLFRS-LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVAR 176
              G        +N  +R+ LVG S  +QE+      V+ ++A+V I G SGTGKE++AR
Sbjct: 121 SPAG----QGGGENEPWRADLVGGSPAMQELLERARLVAASDASVFIAGASGTGKELLAR 176

Query: 177 NIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLD 236
            IH  S R + PFV INC AIP  LLESELFGH KGAFTGA    KG F  A+GGT+FLD
Sbjct: 177 AIHLASPRADKPFVAINCAAIPENLLESELFGHRKGAFTGATYNHKGLFLEADGGTVFLD 236

Query: 237 EIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYY 296
           EIGDMP+S+Q KLLRVLQER    VG    +  +VRV++ATHR+L+E++   +FREDLYY
Sbjct: 237 EIGDMPLSLQAKLLRVLQERQVRPVGATQAVPVDVRVVSATHRDLDELLKSGQFREDLYY 296

Query: 297 RLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPI-CFTPRAINSMMEHDWPGNVRE 355
           RLNV  + +P L +R +DIPLL    + R  +   +P+  F P A+ +++   WPGNVR+
Sbjct: 297 RLNVVSLALPLLAERREDIPLLANHFLQRTASRYGKPVTAFAPDAMEALVTAPWPGNVRQ 356

Query: 356 LANLVERMVILYPNS--LVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQ----ERDVL 407
           L N+VE+ V L P S  LV    +    R  D        S F+S++E     ERD L
Sbjct: 357 LQNVVEQAVALSPVSGGLVPAALIQGALRSGD--------SAFTSLDEAKKVFERDYL 406