Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  255 bits (651), Expect = 3e-72
 Identities = 180/506 (35%), Positives = 260/506 (51%), Gaps = 51/506 (10%)

Query: 3   SLAKLLVIEDDAAIRLNLSVILE---FVGEQCEVIEST--QIDQINWSAVWGGCILGSLR 57
           S A +L+++DDAA R  L  +L    +  E+ +  ES   ++ Q  W AV     +  + 
Sbjct: 2   STATILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRMARMD 61

Query: 58  GQALSEQLIQSLTKANHIPLLVANKQPYSLEE------FPNYVGELDFP---------LN 102
           G A    ++     A  + ++ A     +  E      +   +  LDF          L+
Sbjct: 62  GIAALRHILD-WNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALD 120

Query: 103 YPQLSDALRHCKEFLGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVL 162
           + +L+   R  +E L  +G      A        ++G+S  + E+  +I  V+ +EA VL
Sbjct: 121 HTRLASENRELRERLSSQGGAGAPGAS-----HGIIGRSAPMHELVEMIATVAPSEATVL 175

Query: 163 ILGESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARK 222
           I GESGTGKE+VAR +H  S R   P V +NC A+   LLESELFGHE+GAFTGA   R+
Sbjct: 176 ITGESGTGKELVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRRE 235

Query: 223 GRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLE 282
           GRF  A+GGTLFLDEIG+MP+++Q KLLR LQ+   +RVG ++ +  +VRVIAAT+R+L 
Sbjct: 236 GRFVQADGGTLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLR 295

Query: 283 EMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPI-CFTPRAI 341
           E     +FREDLYYRLNV  + +PALR+R  D+PLL    + R   +  + +  FTP+A+
Sbjct: 296 EEAAAGRFREDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAM 355

Query: 342 NSMMEHDWPGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEE 401
           + ++ HDWPGNVREL N +ER VIL     V    LP  +               S +  
Sbjct: 356 DMLLRHDWPGNVRELENAIERAVILATGDYVTERELPLHFGGGG-----------SGIAG 404

Query: 402 QERDVLEGIFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGG 461
                  G         E        D     P  G++L+    DLE   I   L     
Sbjct: 405 SGGSAGTG---------EAGAGNAPADGDGLAPYAGLSLE----DLERRAIIATLRETAD 451

Query: 462 VVARAADMLGMRRTTLVEKMRKYNMQ 487
             + AA  LG+ R TL  K++KY+++
Sbjct: 452 NKSEAARRLGITRATLHNKLKKYDLE 477