Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  253 bits (647), Expect = 7e-72
 Identities = 151/374 (40%), Positives = 214/374 (57%), Gaps = 49/374 (13%)

Query: 122 FQVLATARKNTLFRS------LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVA 175
           F+ L   R+N   R        +G+S  + +V   I  ++ +   VL+LG SG+GKE+VA
Sbjct: 119 FRFLDLKRENARLRGERDDGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVA 178

Query: 176 RNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFL 235
             +H  S RR+ PF+ INC A+P  LLESELFGHEKGAFTGA  ARKG+FE A+GGTLF 
Sbjct: 179 GALHRLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFF 238

Query: 236 DEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLY 295
           DE G+MP+++Q KLLRVL+++    VGGN   K +VR + AT R+LEE I    FREDLY
Sbjct: 239 DEAGEMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLY 298

Query: 296 YRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRE 355
           YR+NV P+ +P LR+R  D+ LL +  + R  A+  + + F+ +A N+++ +D+PGNVRE
Sbjct: 299 YRINVVPVTLPPLRERGGDVALLAERFLRRFCAQHDRQVTFSEQARNALLAYDYPGNVRE 358

Query: 356 LANLVERMVILYPNSLVDVNHLPTKYRYSD--IPEFQPEPSRFSSVEEQERDVLEGIFAE 413
           L N +ER VIL     + V HLP + R +     E QPE +RF                 
Sbjct: 359 LRNAIERAVILCAEDKIHVGHLPKRIRDATQASQEQQPEETRF----------------- 401

Query: 414 DFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMR 473
                                   V L + +A  E   I +AL+  GG   RAA++LG+ 
Sbjct: 402 ------------------------VQLADGVAQFEKKRILEALQKTGGRRIRAAELLGIT 437

Query: 474 RTTLVEKMRKYNMQ 487
           R  L  K+++ +++
Sbjct: 438 RKQLWLKLKELDIK 451