Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  257 bits (656), Expect = 7e-73
 Identities = 150/364 (41%), Positives = 212/364 (58%), Gaps = 52/364 (14%)

Query: 128 ARKNTLFRS-----LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHS 182
           A K TL  S     ++GQS  +  +  ++  ++ +EA VL+ GESGTGKE++AR IH +S
Sbjct: 133 ALKTTLASSFDPAGIIGQSQSMHRLMDMMASIAPSEATVLVTGESGTGKELIARAIHANS 192

Query: 183 GRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMP 242
            RR+GP+V +NC A+   LLESELFGHEKGAFTGA   R+GRF+ A+ GT+FLDEIG+  
Sbjct: 193 QRRHGPYVTVNCAALTETLLESELFGHEKGAFTGAEKRREGRFQSADKGTIFLDEIGETS 252

Query: 243 MSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFP 302
           + MQ KLLR +QER  +RVG + T++ +VR+IAAT+R+L   ++  +FR+DLYYRLNV  
Sbjct: 253 LPMQAKLLRAIQEREIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQDLYYRLNVVT 312

Query: 303 IEMPALRDRIDDIPLLLQELMTRM-EAEGAQPICFTPRAINSMMEHDWPGNVRELANLVE 361
           + +P LR+R++DIPLL    + R  E  G +   FTP+A++ +++HDWPGNVREL N  E
Sbjct: 313 LHVPPLRERVEDIPLLAGHFLRRFTEKNGKRVKGFTPQAMDRLLKHDWPGNVRELENAAE 372

Query: 362 RMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQ 421
           R V+L     +    LP                            + G            
Sbjct: 373 RAVVLLVGEYISERELP--------------------------HAIAG------------ 394

Query: 422 EFVPDIDAPQALPP-EGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEK 480
               D DA  A+P   G+ L+E    +E   I  A++A  G  + AA  LG+ R TL  K
Sbjct: 395 ---GDGDATCAVPRFNGMTLEE----IERAAILDAMDASEGNKSEAARRLGITRKTLHAK 447

Query: 481 MRKY 484
           + +Y
Sbjct: 448 LNRY 451