Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  250 bits (638), Expect = 1e-70
 Identities = 151/391 (38%), Positives = 221/391 (56%), Gaps = 46/391 (11%)

Query: 137 LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGA 196
           +VG S  +  VR  I Q   +EA +LI+GESGTGKE++A+ +H  S R + P V +NC A
Sbjct: 142 IVGASQAMCRVRDFIRQAGPSEATILIMGESGTGKELIAQGLHDASNRADQPLVKVNCAA 201

Query: 197 IPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQER 256
           +P  LLESELFG+ KGAFTGA+  + GRF+LA GGTLFLDEIG++P+ +Q KLLR LQER
Sbjct: 202 LPGHLLESELFGYMKGAFTGAVRDKPGRFQLARGGTLFLDEIGELPLELQSKLLRALQER 261

Query: 257 CFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIP 316
             E +G    +  +VR+IAAT+R+L+  ++  +FREDL++RLNV  +  P LRDR++D+P
Sbjct: 262 VVEPLGAVRPVPVDVRIIAATNRDLKRAVEAGEFREDLFFRLNVLEVISPPLRDRLEDLP 321

Query: 317 LLLQELMTRMEAEGAQPI-CFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVN 375
           +L   L+ R+  +  + I   +P  ++++M + WPGNVREL N++ER +IL  +  +  +
Sbjct: 322 MLAGRLLERLCRKNKKGIRSVSPEFLDALMRYSWPGNVRELENVLERALILSRSDTLGPD 381

Query: 376 HLPT------------------KYR------------YSDIPEFQPEPSRFSSVEEQE-- 403
            LP+                  +YR             SD P+            E++  
Sbjct: 382 SLPSQVLADRADRWERGGPDGGQYRGQDRVGDRQRPYSSDRPDMSDRAGMVDRAFERQGR 441

Query: 404 ---RDVLEGIFAEDFNFE-EPQEFVPD--IDAPQALPPEGVNLKELLADLEVNLINQALE 457
              +D    I   D ++  E   F+P     AP A P         L D E + + +ALE
Sbjct: 442 PWGQDAASAIPRGDASWSGEGDGFMPGGYGGAPGAYPGS-------LDDAERDALLRALE 494

Query: 458 AQGGVVARAADMLGMRRTTLVEKMRKYNMQR 488
             GG   R AD LG+ R TL  K++K+ + R
Sbjct: 495 VHGGHRERTADALGISRRTLQYKLKKFGLIR 525