Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., sigma-54 dependent transcriptional regulator/sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  243 bits (621), Expect = 8e-69
 Identities = 120/245 (48%), Positives = 174/245 (71%), Gaps = 4/245 (1%)

Query: 141 SMGIQEVRHLIEQ---VSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGAI 197
           S G   +RH+I+Q   V+ T++ VLI GE+GTGKE+VARN+H  S R++ P + +NC A 
Sbjct: 178 SGGSAVIRHMIQQLHMVANTDSTVLICGENGTGKELVARNLHQLSRRKDKPMISVNCAAF 237

Query: 198 PAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERC 257
            A LLESELFGHEKGAFTGA + RKGRFELA  GTLFLDE+ ++ +  Q KLLRV+QE+ 
Sbjct: 238 SASLLESELFGHEKGAFTGATSQRKGRFELAHQGTLFLDEVAELSLEAQSKLLRVIQEQS 297

Query: 258 FERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIPL 317
           FER+GG+ TIK ++R++AA+H +L + ++   FR DLYYRLNVFPI++P LR R+ D+P 
Sbjct: 298 FERLGGSETIKVDIRLVAASHHDLLKRVEQGLFRMDLYYRLNVFPIQVPPLRARLGDMPE 357

Query: 318 LLQELMTRMEAE-GAQPICFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVNH 376
           L+  ++  +  + G +    + + +  +M + WPGNVREL N++ER  IL    ++ ++ 
Sbjct: 358 LVSHILHTLNRKLGKKIRGVSQKGLKKLMTYSWPGNVRELQNILEREAILSQTDILHIHA 417

Query: 377 LPTKY 381
           +PT +
Sbjct: 418 MPTHH 422