Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., flagellar regulatory protein A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  518 bits (1334), Expect = e-151
 Identities = 285/496 (57%), Positives = 354/496 (71%), Gaps = 29/496 (5%)

Query: 1   MQSLAKLLVIEDDAAIRLNLSVILEFVGEQCEVIE----STQIDQINWSAVWGGCILGSL 56
           MQ+  ++L++   +     L  I EF+GEQ ++I     ST + +  + A+     + ++
Sbjct: 2   MQTDQRILLVGTPSERLSRLCCIFEFLGEQIDIITIEKLSTCLQETRFRALV--ISIDNM 59

Query: 57  RGQAL----SEQLIQSLTKANHIPLLVANKQPYSLEEFPNYVGELDFPLNYPQLSDALRH 112
              AL    S+   Q +    H+  L          +  N +G ++ PLNYPQL++ L  
Sbjct: 60  SADALKLVASQYPWQPILLFGHVGEL----------QVSNVLGHIEEPLNYPQLTELLHF 109

Query: 113 CKEFLGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKE 172
           C+ +   K  QV  +A +  LFRSLVG+S GI  VRHLI QV+T++A VL+LG+SGTGKE
Sbjct: 110 CQVYGQVKRPQVPTSANQTKLFRSLVGRSDGIANVRHLISQVATSDATVLVLGQSGTGKE 169

Query: 173 VVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGT 232
           VVARNIHY S RR+GPF+P+NCGAIP ELLESELFGHEKG+FTGAI++RKGRFELAEGGT
Sbjct: 170 VVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGT 229

Query: 233 LFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFRE 292
           LFLDEIGDMP+ MQVKLLRVLQER FERVGG  TI A+VRV+AATHR+LE MI   +FRE
Sbjct: 230 LFLDEIGDMPLQMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFRE 289

Query: 293 DLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGN 352
           DLYYRLNVFPIEMPAL +R DD+PLLLQEL++R+  EG   + FT RAI S+ EH W GN
Sbjct: 290 DLYYRLNVFPIEMPALSERKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSGN 349

Query: 353 VRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFA 412
           VREL+NLVER+ ILYP  LVDVN LP KYR+ D+PE+  E S     E+QERD L  IF 
Sbjct: 350 VRELSNLVERLTILYPGGLVDVNDLPIKYRHIDVPEYSVELSE----EQQERDALASIFT 405

Query: 413 EDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGM 472
                EEP E +P+   P  LPPEGVNLK+LLA+LE+++I QALE Q  VVARAA+MLG+
Sbjct: 406 S----EEPVE-IPETRFPSELPPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGI 460

Query: 473 RRTTLVEKMRKYNMQR 488
           RRTTLVEKMRKY M +
Sbjct: 461 RRTTLVEKMRKYGMTK 476