Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., formate hydrogenlyase transcriptional activator, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  246 bits (629), Expect = 1e-69
 Identities = 120/243 (49%), Positives = 171/243 (70%), Gaps = 2/243 (0%)

Query: 137 LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGA 196
           +VG + G+++V   ++ ++     VL+LGE+G GKEV+A  IH  S R   PF+ +NCGA
Sbjct: 190 VVGANSGLKQVMQQVQSIAKINTTVLMLGETGCGKEVIANAIHELSERAGKPFIKVNCGA 249

Query: 197 IPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQER 256
           IP  L++SELFG+EKGAFTGA + + G FE A GGT+FLDEIG++P+S QV+LLRVLQ  
Sbjct: 250 IPDTLIDSELFGYEKGAFTGAESRKIGYFEQANGGTIFLDEIGELPLSAQVRLLRVLQNS 309

Query: 257 CFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIP 316
           C  RVGG+  ++ ++R+IAATHRNL+ M+  + FREDL+YRL +FPIE+P+LR R  DIP
Sbjct: 310 CITRVGGHDAVQLDIRIIAATHRNLQAMVHREVFREDLWYRLAIFPIEIPSLRQRRTDIP 369

Query: 317 LLLQELMTRMEAEGAQPIC--FTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDV 374
           LL+Q  + ++ A+   P      P  +N + ++ WPGNVREL N++ER +I +P   +D 
Sbjct: 370 LLVQHFIEQLSAKFNLPQLPRIAPDQLNILNQYGWPGNVRELINVLERAMIQHPAGPLDF 429

Query: 375 NHL 377
             L
Sbjct: 430 RFL 432