Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  247 bits (630), Expect = 7e-70
 Identities = 123/244 (50%), Positives = 170/244 (69%), Gaps = 1/244 (0%)

Query: 140 QSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPA 199
           +S  ++EV   I  V+ T + VL+ GE+GTGK ++AR IH HS R    F+ ++CGAIP 
Sbjct: 155 RSPRMREVYDKIRLVAATRSTVLLTGETGTGKSLIARLIHSHSNRHGKRFISVHCGAIPE 214

Query: 200 ELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFE 259
            L+ESELFGHEKGAFTGAI  + GRFE+AEGGT+FLDEIG +  S+Q+KLL VLQ+RCF+
Sbjct: 215 ALVESELFGHEKGAFTGAIRKKPGRFEIAEGGTIFLDEIGTIGPSVQIKLLNVLQDRCFQ 274

Query: 260 RVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIPLLL 319
           RVGG + I+ +VRV+AAT+ +L  +    +FR DLYYRLNVFPI++P LR+R +DI  L 
Sbjct: 275 RVGGETVIRPDVRVVAATNEDLSTLCAQGRFRRDLYYRLNVFPIDIPPLRERKEDILQLA 334

Query: 320 QELMTRMEAEGAQPI-CFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVNHLP 378
           +  + R   + ++ I    P  I++ M +DWPGNVREL N++ER  IL    ++     P
Sbjct: 335 EAFVRRCNPQRSRDIRAIHPDVIDAFMRYDWPGNVRELENIIERACILEGGEVLSPEAFP 394

Query: 379 TKYR 382
            ++R
Sbjct: 395 AEFR 398