Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  244 bits (623), Expect = 5e-69
 Identities = 172/488 (35%), Positives = 262/488 (53%), Gaps = 73/488 (14%)

Query: 20  LSVILEFVGEQCEVIES----TQIDQINWSAVWGGCILGSLRGQALSEQLIQSLTKANH- 74
           + V+L+ +G+    I+     T I+++   A   GC      G+ ++E+ + SL   +H 
Sbjct: 87  IKVVLDTIGDGVMSIDGGGRITSINKVAREAY--GCA-----GEDVTERSLTSLRLPDHG 139

Query: 75  -IPLLVANKQPYSLEEFPNYVGELDFPLNYPQLSDAL----------RHCKEFLGRKGFQ 123
            +  L   +   +  E    +G L F +    + D +          R  +E   RK  +
Sbjct: 140 LLDCLHGRELHDARRELATPLGRLQFFVTRTPIRDGVGRIIGAVEIARDMREI--RKLAR 197

Query: 124 VLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSG 183
            L  A  +  F  +VG    I+       +V+ T+A + I GESGTGKE+ AR +H  SG
Sbjct: 198 TLVDA-DHVGFDDIVGHHPAIEAAIAFARRVAATDAVIAIRGESGTGKELFARAMHAESG 256

Query: 184 RRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARK-GRFELAEGGTLFLDEIGDMP 242
           R+ GPFVPINC A+P +LLESELFG+E+GAFTG     K G FE A GGT+FLDEIGDMP
Sbjct: 257 RK-GPFVPINCAALPEQLLESELFGYERGAFTGGRREGKPGLFESARGGTVFLDEIGDMP 315

Query: 243 MSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFP 302
           ++ Q K+LRV+QE+   R+GG + +  + R+I AT+R LE M++  +FR+DLYYR+NV P
Sbjct: 316 LASQAKILRVMQEQRVRRIGGEAEVPVDARIITATNRPLERMVEDGRFRQDLYYRINVLP 375

Query: 303 IEMPALRDRIDDIPLL----LQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRELAN 358
           + +P LR+R  DIPLL    LQ+L +R+   GA P  FT  A+  +  H+WPGNVREL N
Sbjct: 376 MHIPPLRERRGDIPLLANHFLQQLASRI--GGAAP-AFTDGALARLRSHEWPGNVRELKN 432

Query: 359 LVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFE 418
           +VER  IL   ++VD   +                  FS       ++ +G+F       
Sbjct: 433 VVERAAILAGGAVVDDQFI-----------------LFS------HELGKGVF------- 462

Query: 419 EPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLV 478
                  +     +   +G  LKE +A+ E  ++   +  +   + +AA +LG+  T L+
Sbjct: 463 -------NAARTASAAGQGDTLKEQVANFEKKIVEDVVR-RAPSIRKAAKILGISHTALL 514

Query: 479 EKMRKYNM 486
           +KMR++ +
Sbjct: 515 DKMRRHGV 522