Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  246 bits (628), Expect = 1e-69
 Identities = 172/491 (35%), Positives = 252/491 (51%), Gaps = 55/491 (11%)

Query: 7   LLVIEDDAAIRLNLSVILEFVGEQCEVIESTQ-----IDQINWSAVWGGCILGSLRGQAL 61
           +L++ED+ ++RL +   L   G +    ++ +     + +  +  V     L  + G  L
Sbjct: 6   ILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGMSGMEL 65

Query: 62  SEQLIQSLTKANHIPLLVANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKEFLGRKG 121
            +  I+ +     + L+ A  +   L       G  DF L  P  SD L    E    + 
Sbjct: 66  LDS-IREMHPGTGVILITAFPE-VELAVQAIKAGAFDF-LCKPFQSDGLLIAVE----RF 118

Query: 122 FQVLATARKNTLFRS------LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVA 175
           F+ L   R+N   R        +G+S  + +V   I  ++     VL+LG SG+GKE+VA
Sbjct: 119 FRFLDLKRENDRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVA 178

Query: 176 RNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFL 235
             +H  S RR+ PF+ INC A+P +LLESELFGHEKGAFTGA  AR G+FE A+GGTLF 
Sbjct: 179 GALHRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFF 238

Query: 236 DEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLY 295
           DE+G+MP+ +Q KLLRVL+++    VGGN+  K NVR + AT RNLEE I   +FREDLY
Sbjct: 239 DEVGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLY 298

Query: 296 YRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRE 355
           YR+NV P+ +P LR+R  D+ LL +  + R  A   +    + +A  +++ +D+PGNVRE
Sbjct: 299 YRINVVPVTLPPLRERGSDVALLTERFLRRFCALHERQATLSEQARLALLAYDYPGNVRE 358

Query: 356 LANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDF 415
           L N VE  V+L     + V HLP + R +                               
Sbjct: 359 LRNAVEHAVLLCTEGEIHVGHLPERIRAA------------------------------- 387

Query: 416 NFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRT 475
                Q   P  D      P   +L E +A  E   I +ALE  GG   +AAD+LG+ R 
Sbjct: 388 ----TQSMPPACDDDAGDTP--ASLAEGVARFERRRIMEALERTGGRKIQAADLLGISRK 441

Query: 476 TLVEKMRKYNM 486
            L  K+++ ++
Sbjct: 442 QLWLKLKELSI 452