Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  274 bits (701), Expect = 4e-78
 Identities = 185/504 (36%), Positives = 265/504 (52%), Gaps = 61/504 (12%)

Query: 5   AKLLVIEDDAAIRLNLSVILEFVGEQCEVIES-----------TQIDQINWSAVW----- 48
           A++L+I+D+  IR +L  ILE  G   EV E+           +    + +  +W     
Sbjct: 3   ARILIIDDEDDIRFSLRGILEDEGH--EVTEAPDGEAGLRTLASDTPDVVFLDIWMPGMD 60

Query: 49  GGCILGSLRGQALSEQLIQSLTKANHIPLLVANKQPYSLEEFPNYVGELDF---PLNYPQ 105
           G  +L  +   A S  +I           + A K+           G  DF   PL+  +
Sbjct: 61  GLTVLEHIHAAAPSLPVIMISGHGTIETAVAAIKK-----------GAHDFIEKPLSLEK 109

Query: 106 LSDALRHCKEF--LGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLI 163
           +  A     E   L R+   + ++    +    L+G+S  ++ +R  I +V+ T+A VLI
Sbjct: 110 VVIAAERALEMRELRRENQALRSSLGAGSKADELIGESAPMRRIREQIARVAPTDAWVLI 169

Query: 164 LGESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKG 223
            GE+GTGKE+ AR +H  S R   P V +NC AIP EL+ESELFGHEKGAFTGA +AR G
Sbjct: 170 TGENGTGKELAARAVHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTG 229

Query: 224 RFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEE 283
           +FE+A  GTLFLDEIGDM +  Q K+LR+LQE+ FE+VGG  TI+ +VRV+AAT++NLEE
Sbjct: 230 KFEMAHRGTLFLDEIGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEE 289

Query: 284 MIDGQKFREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGA-QPICFTPRAIN 342
            I    FREDLYYRL VFP+ +PALR+R DDI  LL   M R+  + A  P+ FT  A +
Sbjct: 290 QIAQGTFREDLYYRLRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQD 349

Query: 343 SMMEHDWPGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQ 402
            ++ + WPGNVREL N VERM+IL+    VDV  LP +     + +  P     +    Q
Sbjct: 350 VLLRYRWPGNVRELRNFVERMLILHAGESVDVEDLPPEC----LRDLSPSSDSATGTAAQ 405

Query: 403 ERDVLEGIFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGV 462
                 G   +                        ++ K      E   + + L+  GG 
Sbjct: 406 SATATCGTGVDGI----------------------LDFKAARNAFETRFLAEQLQECGGN 443

Query: 463 VARAADMLGMRRTTLVEKMRKYNM 486
           V+R A+ +G+ R+ L  K++ Y +
Sbjct: 444 VSRLAERIGLERSHLHRKLKGYGI 467