Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  261 bits (666), Expect = 5e-74
 Identities = 175/494 (35%), Positives = 266/494 (53%), Gaps = 59/494 (11%)

Query: 7   LLVIEDDAAIRLNLSVILEFVGEQCEVIESTQ-----IDQINWSAVWGGCILGSLRGQAL 61
           +L+IEDD A +  L   LE  G +   +   +     +   ++  V    +L  + G   
Sbjct: 5   ILLIEDDTAFQGMLREALEERGYRVTAVNRAEDGVRIVRSGDFDLVLTDVMLPGISGVEA 64

Query: 62  SEQLIQSLTKANHIPLLVANKQPYSLEEFPNYVGELDF---PLNYPQLSDALRHCKEFLG 118
             +L ++    + + +   + +  +LE     +G  DF   P +  +L   +R   E   
Sbjct: 65  IPRLREAAPGTDIVVMTAFSTRELALEAVK--LGAYDFFSKPFSLKELDIVIRRAMEKRR 122

Query: 119 RKGFQVLA---TARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVA 175
            +G +++A   T R++T    +VG+S  +++V+ L+E+++  E+ VLI+GESGTGKE++A
Sbjct: 123 MQG-EIVALRETLRRDTPTSRIVGESRAMRDVKALLERIAPLESTVLIMGESGTGKELIA 181

Query: 176 RNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFL 235
             I   S R   PFV +NC AIP  L E+ELFGHEKGAFTGA TA  G+FE A+GG + L
Sbjct: 182 DTIRALSPRAANPFVKVNCAAIPEHLFENELFGHEKGAFTGAATAMPGKFEQAQGGMIML 241

Query: 236 DEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLY 295
           DEIGDMP+++Q KLLRV++++  ER+GG + +  +VR+IAAT++NL E +  + FREDLY
Sbjct: 242 DEIGDMPLAIQPKLLRVVEQKQVERLGGRAPVPLDVRIIAATNQNLAERVREKAFREDLY 301

Query: 296 YRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPI-CFTPRAINSMMEHDWPGNVR 354
           YRL+V  + +P LRDR DDIPLL Q  + ++E     P+   +P AI  +M+HDWPGNVR
Sbjct: 302 YRLSVAVVLIPPLRDRKDDIPLLAQYFVNKLEGTLGLPVHGLSPDAIAVLMDHDWPGNVR 361

Query: 355 ELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGI-FAE 413
           +LAN++ER  I     +                                RDV+  I  A 
Sbjct: 362 QLANVLERAAIAADGLIC------------------------------ARDVMAAIGTAR 391

Query: 414 DFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMR 473
             N ++                 G++LK  L  +E NLI  AL    G    AA +LG+ 
Sbjct: 392 GSNVDK-------------ATLSGMDLKTTLRMVERNLILDALRRCHGRQTEAAVLLGLT 438

Query: 474 RTTLVEKMRKYNMQ 487
              L  K+RK+ ++
Sbjct: 439 PKNLWAKLRKHGIR 452