Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  246 bits (629), Expect = 9e-70
 Identities = 143/353 (40%), Positives = 205/353 (58%), Gaps = 38/353 (10%)

Query: 137 LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGA 196
           LVG S  +  +R  I Q   +EA VLI+GESGTGKE++A+ +H  S R   P V +NC A
Sbjct: 142 LVGASQVMHRMRDFIRQAGPSEATVLIMGESGTGKELIAQALHDASTRARQPLVKVNCAA 201

Query: 197 IPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQER 256
           +P  LLESELFG+ +GAFTGA+  + GRF+LA GGTLFLDEIG++P+ +Q KLLRVLQER
Sbjct: 202 LPGHLLESELFGYVRGAFTGAVKDKPGRFQLARGGTLFLDEIGELPLELQAKLLRVLQER 261

Query: 257 CFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIP 316
             E +GG   +  +VR+IAAT+R+L   +    FREDLY+RLNV  +  P LR R++D+P
Sbjct: 262 VVEPLGGVRPVSVDVRIIAATNRDLRREVAKGTFREDLYFRLNVLEVVSPPLRKRMEDLP 321

Query: 317 LLLQELMTRMEAEGAQPI-CFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVN 375
            L++EL+ ++  +  + I C +     ++  H WPGNVREL N++ER +IL     +  +
Sbjct: 322 QLVEELLGKLCRKNRKSIRCISADFFEALSRHSWPGNVRELENVLERALILSRTDSLSAD 381

Query: 376 HLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQALPP 435
            LP +  + D P+         +  +QER V                 V D   P +L  
Sbjct: 382 ALPPQL-FGDEPQV--------ADMQQERPV-----------------VDDDSRPCSLD- 414

Query: 436 EGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQR 488
                     + E   + +AL+  GG   + AD LG+ R TL  K++K+ + R
Sbjct: 415 ----------EAEKGELLRALDVHGGHREKTADALGISRRTLQYKLKKFGLTR 457