Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  249 bits (636), Expect = 2e-70
 Identities = 146/352 (41%), Positives = 196/352 (55%), Gaps = 51/352 (14%)

Query: 137 LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGA 196
           LVG S  +Q + HL+E ++ T+  VL+ GESGTGKE+VA  +H    R  GP + +NC A
Sbjct: 267 LVGLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELVAEALHNAGPRATGPLIKVNCAA 326

Query: 197 IPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQER 256
           +P  LLESELFGH +GAFTGA+  R GRF+LA GGT+FLDEIGD+   +Q++LLRVLQER
Sbjct: 327 LPETLLESELFGHVRGAFTGALRDRVGRFQLAHGGTIFLDEIGDLSPQVQLRLLRVLQER 386

Query: 257 CFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIP 316
            FERVG   T + +VRVIAATHRNL E +    FREDLYYRL V  + MP LR+R +D+ 
Sbjct: 387 EFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDLYYRLRVVELHMPPLRERHEDLA 446

Query: 317 LLLQELMTRMEAEGAQPIC-FTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVN 375
           LL +  +     + ++ +  FT  A  ++M H WPGNVREL + VE   IL     +D+ 
Sbjct: 447 LLAEHFVGVFNQQFSRCVMGFTEAASRALMTHSWPGNVRELRHAVEHGFILCKGERIDLA 506

Query: 376 HLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQALPP 435
            LP   + ++   F P   R S V E                                  
Sbjct: 507 DLPPDVQGTEASVF-PRAER-SGVHEAA-------------------------------- 532

Query: 436 EGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
                           + +AL+  GG  ARAA +LG+ R TL  K+ +Y ++
Sbjct: 533 ----------------VREALKKAGGNKARAARLLGVARQTLYRKLAEYGIR 568