Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  250 bits (638), Expect = 9e-71
 Identities = 122/260 (46%), Positives = 178/260 (68%), Gaps = 2/260 (0%)

Query: 123 QVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHS 182
           Q ++  R   +   +VG + G+++V   ++ ++     VL+LGE+G GKEV+A  IH  S
Sbjct: 176 QNVSLRRTLDIQNGVVGANSGLKQVMQQVQSIAKINTTVLMLGETGCGKEVIANAIHELS 235

Query: 183 GRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMP 242
            R   PF+ +NCGAIP  L++SELFG+EKGAFTGA + + G FE A GGT+FLDEIG++P
Sbjct: 236 ERSGKPFIKVNCGAIPDTLIDSELFGYEKGAFTGADSRKVGYFEQANGGTIFLDEIGELP 295

Query: 243 MSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFP 302
           +S QV+LLRVLQ  C  RVGG+  ++ ++R++AATHRNL+ M+  + FREDL+YRL +FP
Sbjct: 296 LSAQVRLLRVLQNSCITRVGGHDAVQLDIRIVAATHRNLQAMVHREVFREDLWYRLAIFP 355

Query: 303 IEMPALRDRIDDIPLLLQELMTRMEAEGAQPIC--FTPRAINSMMEHDWPGNVRELANLV 360
           IE+P+LR R  DIPLL+Q  + ++ A+   P      P  +N + ++ WPGNVREL N++
Sbjct: 356 IEIPSLRQRRTDIPLLVQHFIEQLSAKFNLPQLPRIAPEQLNILNQYGWPGNVRELINVL 415

Query: 361 ERMVILYPNSLVDVNHLPTK 380
           ER +I +P   +D + L  K
Sbjct: 416 ERAIIQHPAGPLDFSFLAPK 435