Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  518 bits (1334), Expect = e-151
 Identities = 283/492 (57%), Positives = 352/492 (71%), Gaps = 21/492 (4%)

Query: 1   MQSLAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLRGQA 60
           MQ+  ++L++   +     L  I EF+GEQ E++   ++        +   ++ +     
Sbjct: 2   MQTDQRILLVGTPSERLSRLCCIFEFLGEQIEIVAIEKLSLCLQDTRFRALVVTA---DN 58

Query: 61  LSEQLIQSLTKANHIP----LLVANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKEF 116
           +    ++SL  A+  P    LL  N     +    N +G ++ PLNYPQL++ L  C+ +
Sbjct: 59  MPADALKSL--ASQYPWQPILLFGNVDDLQVS---NVLGHIEEPLNYPQLTELLHFCQVY 113

Query: 117 LGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVAR 176
              K  QV  +A +  LFRSLVG+S GI  VRHLI QV+T++A VL+LG+SGTGKEVVAR
Sbjct: 114 GQVKRPQVPTSANQTKLFRSLVGRSEGIANVRHLISQVATSDATVLVLGQSGTGKEVVAR 173

Query: 177 NIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLD 236
           NIHY S RR+GPF+P+NCGAIP ELLESELFGHEKG+FTGAI++RKGRFELAEGGTLFLD
Sbjct: 174 NIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLD 233

Query: 237 EIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYY 296
           EIGDMP+ MQVKLLRVLQER FERVGG  TI A+VRV+AATHR+LE MI   +FREDLYY
Sbjct: 234 EIGDMPLQMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFREDLYY 293

Query: 297 RLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVREL 356
           RLNVFPIEMPAL +R DD+PLLLQEL++R+  EG   + FT RAI S+ EH W GNVREL
Sbjct: 294 RLNVFPIEMPALSERKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSGNVREL 353

Query: 357 ANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFN 416
           +NLVER+ ILYP  LVDVN LP KYR+ D+PE+  E S     E+QERD L  IF     
Sbjct: 354 SNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEMSE----EQQERDALASIFTS--- 406

Query: 417 FEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTT 476
            EEP E +P+   P  LPPEGVNLK+LLA+LE+++I QALE Q  VVARAA+MLG+RRTT
Sbjct: 407 -EEPVE-IPETRFPSELPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTT 464

Query: 477 LVEKMRKYNMQR 488
           LVEKMRKY M +
Sbjct: 465 LVEKMRKYGMTK 476