Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., Flagellar sensor histidine kinase FleS from Pseudomonas fluorescens FW300-N2E2

 Score =  273 bits (697), Expect = 7e-78
 Identities = 149/336 (44%), Positives = 217/336 (64%), Gaps = 11/336 (3%)

Query: 8   EQHSHLDSLEDQVERYKQVLDVMPAGVILLDTQGIVREANPEAQRLLDVPLVGEKWYSVI 67
           ++   L   E    R + +LD++P GVI++D  G VREANP A  LL +PL GE W  VI
Sbjct: 50  QRMQELAEKERLANRLQNLLDLLPGGVIVIDAHGRVREANPAACELLGLPLEGELWRHVI 109

Query: 68  QIAFAPRDDDGHEISLRNGRKVRLAISA--STTGQLILITDLTETRLLQSRISDLQRLSS 125
              FAPRDDDGHE+SL++GR++ ++  +  +  GQL+L+ DLTETR LQ +++  +RLSS
Sbjct: 110 ARCFAPRDDDGHEVSLKDGRRLSISTRSLDAEPGQLVLLNDLTETRHLQDQLARHERLSS 169

Query: 126 LGRMVASLAHQVRTPLSSAMLYAANLAAPNLPPATRERFQSKLVDRLHDLEKQVNDMLLF 185
           LGRMVASLAHQ+RTPLS+A+LYA++L    LP  T++RF  +L +RLH+LE QV DML+F
Sbjct: 170 LGRMVASLAHQIRTPLSAALLYASHLTEQQLPMETQQRFAGRLKERLHELEHQVRDMLVF 229

Query: 186 AKGG---DNKVVMPFSIGDLAAEFMPMVETALKNNQIDYGQEVESEETMLLGNANALASA 242
           A+G     ++V     +  L A  +  V+      ++    + +S    +L N + L  A
Sbjct: 230 ARGELPLTDRVTPKALLQSLQAAALTHVQ------ELPIRWQCDSHVGEVLCNRDTLVGA 283

Query: 243 LSNLVMNALQIAGKGSQIDVFFRPVNGELKISVQDNGPGVPESLQHKIMEPFFTTRSQGT 302
           + NL+ NA+Q +G   ++ V     +  L++SV DNG G+  ++  ++ EPFFTT++ GT
Sbjct: 284 VLNLIENAIQASGGDVRLKVHLYTRDNTLRLSVSDNGSGIEPAVLARLGEPFFTTKTTGT 343

Query: 303 GLGLAVVQMVCRAHGGRLELISKEGEGACFTMCIPL 338
           GLGL VV+ V RAH G L+L S+ G G C T+C+PL
Sbjct: 344 GLGLTVVKAVARAHQGELQLRSRLGRGTCATVCLPL 379