Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 984 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  125 bits (315), Expect = 4e-33
 Identities = 91/377 (24%), Positives = 176/377 (46%), Gaps = 32/377 (8%)

Query: 2   MSSAVQEQHSHLDSLE---DQVERY-KQVLDVMPAGVILLDTQGIVREANPEAQRLLDVP 57
           + S ++E HS L  L    D + RY +Q L  +P GV  L     +   N   + L ++P
Sbjct: 609 IESRLEEYHSRLTGLAAELDALRRYHRQTLQELPMGVCSLAKDQEILMWNRALEELTEIP 668

Query: 58  L----------VGEKWYSVIQIAFAPRDDDGHEISL-RNGRK---------VRLAISAST 97
                      + E W S++       D+  H+  L  NG +         +   ++   
Sbjct: 669 ALQVVGSRLSTIAEPWRSLLSDFIEQADEHLHKQRLAHNGHRRCLNLHKAAIAEPLAPGN 728

Query: 98  TGQLILITDLTETRLLQSRISDLQRLSSLGRMVASLAHQVRTPLSSAMLYAANLAAPNLP 157
           +G ++L+ DLTET+ L+ R+   +RL+S+GR+ A +AH++  P++     A NL      
Sbjct: 729 SGLVLLVEDLTETQQLEDRLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLRDERED 788

Query: 158 PATRERFQSKLVDRLHDLEKQVNDMLLFAKGGDNK-VVMPFSIGDLAAEFMPMVETALKN 216
                   ++++++   + + V  ++ FA  G+ +  + P S+  +  + + ++      
Sbjct: 789 DGEIVEISAQIIEQTKRVSRIVQSLMSFAHAGERQHQLYPVSLAQVTQDAIGLLSLNRNR 848

Query: 217 NQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQIDVFFRPVNGELKISVQ 276
            ++ +      +  +  G+   LA  L NL+ NA   + +G  I +        + + V+
Sbjct: 849 TEVQFINLCHPDH-VAEGDPQRLAQVLINLLSNARDASPQGGVIRISSEVAEQTVYLVVE 907

Query: 277 DNGPGVPESLQHKIMEPFFTTR--SQGTGLGLAVVQMVCRAHGGRLELIS----KEGEGA 330
           D G G+P+ +Q ++ EPFFTT+   +GTGLGLA+V  +   H G++++ S    +   G 
Sbjct: 908 DEGSGIPKDIQDRLFEPFFTTKDPGEGTGLGLALVYSIIEEHYGQIDIDSPADPETQRGT 967

Query: 331 CFTMCIPLERQADSSNS 347
            F + +P   +A  + S
Sbjct: 968 RFRITLPRHVEASHAVS 984