Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  103 bits (257), Expect = 1e-26
 Identities = 101/378 (26%), Positives = 169/378 (44%), Gaps = 62/378 (16%)

Query: 26  VLDVMPAGVILLDTQGIVREANPEAQRLLDVPLVGEKWYSVIQIAFAP---------RDD 76
           ++D MP+ +I LD Q  V + N EA  L   PL  +     + +AF P         R  
Sbjct: 292 IIDSMPSALIALDEQLYVTQWNQEASALSGTPL-DDALNQPVFVAFEPLKPFLAQIRRTS 350

Query: 77  DGHEIS-------LRNGRKVRLAIS------ASTTGQLILITDLTETRLLQSRISDLQRL 123
           + H ++       LRN      A++      A   G +I I D+T+   ++  +   +++
Sbjct: 351 EQHVVAKIERVTWLRNDEPHHYALTCYPLTGAGGRGVVIRIDDITQRINMEEMMVQSEKM 410

Query: 124 SSLGRMVASLAHQVRTPLSSAMLYAANLAAPNLPPATRER----------------FQSK 167
            S+G + A +AH++  PL + +  A N+     P   R R                 Q +
Sbjct: 411 LSVGSLAAGMAHEINNPLGAILHNAQNIRRRLSPELERNREAAEETGVRLEAVNQYLQRR 470

Query: 168 LVDRLHD--------LEKQVNDMLLFAKGGDNKVV---MPFSIG---DLAAEFMPMVETA 213
            V +L D          K V+ ML F++  + ++    +P  I    ++A     ++E  
Sbjct: 471 EVPQLLDGIQQAGSRAAKIVSHMLSFSRMSNRQLADCHLPVLIDQALEIAGNDFALME-G 529

Query: 214 LKNNQIDYGQEVESEETMLLGNANALASALSNLVMNALQI-----AGKGSQIDVFFRPVN 268
                ID  ++ +     +    N L   L NL+ NA Q       G+  QI +  R   
Sbjct: 530 FDFKAIDIVRDFDPRVDRVPCIGNELEQVLLNLLKNAAQAIHAHQVGEPGQIILRTRLNP 589

Query: 269 GELKISVQDNGPGVPESLQHKIMEPFFTTR--SQGTGLGLAVVQ-MVCRAHGGRLELISK 325
              +I V+DNG G+PE+++ +I EPFFTT+   QGTGLGL+V   ++   H G++E+  +
Sbjct: 590 PWAEIQVEDNGGGIPENVRKRIFEPFFTTKEVGQGTGLGLSVSYFIITNNHQGQMEVQCQ 649

Query: 326 EGEGACFTMCIPLERQAD 343
            G G  FT+ +PL   A+
Sbjct: 650 PGHGTTFTLRLPLNSPAE 667