Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 595 a.a., Alginate biosynthesis sensor protein KinB from Pseudomonas syringae pv. syringae B728a

 Score =  101 bits (252), Expect = 4e-26
 Identities = 98/370 (26%), Positives = 163/370 (44%), Gaps = 44/370 (11%)

Query: 1   MMSSAVQEQHSHLDSLEDQVERYKQVLDVMPAGVILLDTQGIVREANPEAQRLL--DVPL 58
           M  +  Q Q +++D L    +R + VLD +  G++++D QG +   NP AQR L  D   
Sbjct: 238 MAEALRQHQATNVDELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESR 297

Query: 59  VGEKWYSVIQIAFAPRDDDGHEISLRNGRKVR----LAISAS------------------ 96
           +G   +S+ +    P  D+   + LR G   R    LAI                     
Sbjct: 298 LG---HSLGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKG 354

Query: 97  -TTGQLILITDLTETRLLQSRISDLQRLSSLGRMVASLAHQVRTPLSSA-MLYAANLAAP 154
              G ++++ D+TE R  +   S+          V   +H++RTP++   M +       
Sbjct: 355 HILGAVMVLHDVTEQRAFERVRSEF---------VLRASHELRTPVTGMHMAFGLLQERL 405

Query: 155 NLPPATRER-FQSKLVDRLHDLEKQVNDMLLFAK---GGDNKVVMPFSIGDLAAEFMPMV 210
           +  P +RE    + + + +  L + +ND+L F++   G     + P SI  L  E     
Sbjct: 406 HFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARF 465

Query: 211 ETALKNNQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQIDVFFRPVNGE 270
           E   +   I    +++     L  + + L   L NL+ NAL+       I +  R     
Sbjct: 466 EDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGER 525

Query: 271 LKISVQDNGPGVPESLQHKIMEPFFTT--RSQGTGLGLAVVQMVCRAHGGRLELISKEGE 328
             ISV+DNG G+    Q +I EPF     +  G GLGLA+ + + + HGGR+ + S+ G+
Sbjct: 526 AIISVEDNGEGIAYGQQGRIFEPFVQVGRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQ 585

Query: 329 GACFTMCIPL 338
           G  F M +PL
Sbjct: 586 GTQFYMALPL 595