Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 92/388 (23%), Positives = 173/388 (44%), Gaps = 51/388 (13%)

Query: 6   VQEQHSHLDSLEDQVERYKQVLDVMPAGVILLDTQGIVREANPEAQRLLDVP---LVGEK 62
           + +Q      L  Q  + + +LD +P  +IL+D +GI+R  +  A+R+  +     +G+ 
Sbjct: 126 IDQQKVLEQELRLQQGQLRSILDTVPDAMILIDGRGIMRFFSRAAERMFGMSEREAIGQN 185

Query: 63  WYSVIQIAFAPRDDDGHEISLRNGRKVRLAISASTTGQLI-------------------- 102
              ++    A R D+  +     G +  + I    TG+                      
Sbjct: 186 ISVLMPRPDATRHDNYIDRYNNTGERHIIGIGRIVTGRRKDGSTFPIHLSIGEMESGGER 245

Query: 103 ----LITDLTETRLLQSRISDLQ-------RLSSLGRMVASLAHQVRTPLSSAMLY---A 148
                I DLTE +  Q+R+ +LQ       RL+++G M ++LAH++  PLS+   Y   +
Sbjct: 246 YFTGFIRDLTEYQQTQARLHELQAELVHVSRLTAMGEMASALAHELNQPLSAISNYMKGS 305

Query: 149 ANLAAPNLPPAT------RERFQSKLVDRLHDLEKQVNDMLLFAKGGDNKVVMPFSIGDL 202
             L A +  P T       ER   + + R   + +++ D +  A+G   K V   S+  L
Sbjct: 306 RRLLAGSTDPNTVKIESAMERAAEQAL-RAGQIIRRLRDFV--ARGESEKRVE--SLAKL 360

Query: 203 AAEFMPMVETALKNNQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQIDV 262
             E   +  T  +   +     ++    ++L +   +   L NL  NAL+      + ++
Sbjct: 361 IEEAGALGLTGAREQGVVLRFNLDPAHDLVLVDRVQIQQVLVNLFRNALEAMANSDKKEL 420

Query: 263 FF---RPVNGELKISVQDNGPGVPESLQHKIMEPFFTTRSQGTGLGLAVVQMVCRAHGGR 319
                R  +  ++++V D G G+PE ++ K+ + FFTT+  G G+GL++ + +  AHGGR
Sbjct: 421 SAGNARVADDMVEVTVSDTGSGLPEQVKAKLFQTFFTTKETGMGVGLSISRSIIEAHGGR 480

Query: 320 LELISKEGEGACFTMCIPLERQADSSNS 347
           +   +    GA F   +PL    D +++
Sbjct: 481 MWAETNSAGGATFRFTLPLAPVGDLTDA 508