Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., PAS/PAC sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  283 bits (724), Expect = 5e-81
 Identities = 155/318 (48%), Positives = 214/318 (67%), Gaps = 5/318 (1%)

Query: 22  RYKQVLDVMPAGVILLDTQGIVREANPEAQRLLDVPLVGEKWYSVIQIAFAPRDDDGHEI 81
           R + +L  MP+GV++L+  G+V +ANP A +LL  PL G +W  VI  AF+P+DDDGHE+
Sbjct: 35  RMEHILQAMPSGVVILNGDGVVTDANPVAVQLLGQPLAGIRWLQVINRAFSPQDDDGHEV 94

Query: 82  SLRNGRKVRLAISASTT--GQLILITDLTETRLLQSRISDLQRLSSLGRMVASLAHQVRT 139
           SL+NGR+V+LAI+  T   GQLI++TDLTETRLLQ  +S LQRLS+LG+MVASLAHQVRT
Sbjct: 95  SLKNGRRVKLAITPLTPEPGQLIVLTDLTETRLLQKNLSHLQRLSALGKMVASLAHQVRT 154

Query: 140 PLSSAMLYAANLAAPNLPPATRERFQSKLVDRLHDLEKQVNDMLLFAKGGDNKVVMPFSI 199
           PLS+A+LYAANL +P L   +RERFQ KL+DRL++L +QV+DMLL AKG   ++    ++
Sbjct: 155 PLSAALLYAANLGSPKLTQVSRERFQGKLIDRLNELSQQVDDMLLMAKGRQQELTEVCNM 214

Query: 200 GDLAAEFMPMVETALKNNQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQ 259
             +    M   E   +        ++++       N  AL+SA++NLVMN+++     SQ
Sbjct: 215 QQVMTSVMANCEPIAERKGCQLLLKLDT-HLRFKANPAALSSAINNLVMNSIEAG--ASQ 271

Query: 260 IDVFFRPVNGELKISVQDNGPGVPESLQHKIMEPFFTTRSQGTGLGLAVVQMVCRAHGGR 319
           I +  +   G +   V DNG G+   LQ K++EPFFTT++QGTGLGLAVVQ V   H GR
Sbjct: 272 IWLNAQDETGTVAFEVVDNGKGLDAKLQEKVLEPFFTTKAQGTGLGLAVVQTVVANHQGR 331

Query: 320 LELISKEGEGACFTMCIP 337
           L+L    G+G   +  +P
Sbjct: 332 LQLNCIAGKGCRASFNLP 349