Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 994 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  105 bits (262), Expect = 5e-27
 Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 16/241 (6%)

Query: 109 ETRLLQSRISDLQRLSSLGRMVASLAHQVRTPLSSAM-LYAANLAAPNLPPATRERFQSK 167
           E   L  +  +L  L +  +  A+++H++RTPL+  +     +LA P+L PA R   +  
Sbjct: 200 ELARLYEKTRELDELKT--QFFANISHELRTPLTLILGPVGKHLADPDLAPALRRDLE-- 255

Query: 168 LVDR-LHDLEKQVNDMLLFAKGGDNKVVMPFSIGDLA---AEFMPMVETALKNNQIDYGQ 223
           +V+R    L + VND+L  AK    ++VM ++ GDLA          ++  +  ++ Y  
Sbjct: 256 VVERNARMLYRHVNDLLDVAKLEAGRMVMHYTEGDLAHLTRVIASHFDSLAEGRRVRYVV 315

Query: 224 EVESEETMLLGNANALASALSNLVMNALQIAGKGSQIDVFFRPVNGELKISVQDNGPGVP 283
               + T  + +A      L NL+ NA + AG G  I +      G+ +I V+DNGPG+P
Sbjct: 316 TTPPDLTAQV-DAEKYQRILLNLLSNAFKFAGDGGAIQLRLTAAGGQARIEVEDNGPGIP 374

Query: 284 ESLQHKIMEPF------FTTRSQGTGLGLAVVQMVCRAHGGRLELISKEGEGACFTMCIP 337
           E+++ ++ EPF       +    GTGLGLA+V+ + + HGG + + +    GA FT+ +P
Sbjct: 375 EAMREQVFEPFRQVEGGSSRHHGGTGLGLAIVRELAQLHGGSVRIDAAPSSGALFTLELP 434

Query: 338 L 338
           L
Sbjct: 435 L 435



 Score = 55.8 bits (133), Expect = 5e-12
 Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 15/239 (6%)

Query: 111 RLLQSRISDLQRLS-SLGRMVASLAHQVRTPLSSAMLYAANLAAPN---LPPATRERFQS 166
           R ++ R ++L+  +  L     +++H +R PL +   ++  +   +   LP   RE F  
Sbjct: 743 RRVEERTAELRAANRELDSFAHAVSHDLRAPLRAITGFSRAIIEDHGTALPAEARE-FLD 801

Query: 167 KLVDRLHDLEKQVNDMLLFAKGGDNKVVMP-FSIGDLAAEFMPMVETALKNNQIDYGQEV 225
            ++     +   +  +L  ++    ++      +  LA   +  +  +   +++ +  E 
Sbjct: 802 HIIASGQQMGALIEGLLTLSRSSREELRRDDIDLSALARRILEELARSEPGHRVAWQVE- 860

Query: 226 ESEETMLLGNANALASALSNLVMNALQIAGKGSQ--IDVFFRPVNGELKISVQDNGPGVP 283
             +  +  G+   +   L NL+ NA +   + +   I V  R    +++  + DNG G  
Sbjct: 861 --DGLVARGDIRMIGVVLRNLLGNAWKYTARTAAPLIRVHARRQEKQIQFCIADNGAGFD 918

Query: 284 ESLQHKIMEPFFTTRSQ----GTGLGLAVVQMVCRAHGGRLELISKEGEGACFTMCIPL 338
            +   K+ +PF     Q    G G+GLA VQ V   HGG +E   + G GA F   +PL
Sbjct: 919 MAQVGKLFQPFQRLHRQDEFPGIGIGLATVQRVVHRHGGSIEARGEAGHGASFCFTLPL 977