Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., flagellar regulatory protein B (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  303 bits (776), Expect = 5e-87
 Identities = 160/337 (47%), Positives = 230/337 (68%), Gaps = 5/337 (1%)

Query: 8   EQHSHLDSLEDQVERYKQVLDVMPAGVILLDTQGIVREANPEAQRLLDVPLVGEKWYSVI 67
           +Q + L    +   R + +L  MP+GV++L+  GIV +ANP A  LL+  L G +W  VI
Sbjct: 17  KQWNQLREAANMSNRMEHILQAMPSGVVILNGDGIVTDANPVAVELLEQSLCGARWIDVI 76

Query: 68  QIAFAPRDDDGHEISLRNGRKVRLAISASTT--GQLILITDLTETRLLQSRISDLQRLSS 125
             AFAP+DDDGHE+SLRNGR+V+LAI+  T   GQLI++TDLTETRLLQ  +S LQRLS+
Sbjct: 77  HTAFAPQDDDGHEVSLRNGRRVKLAITPLTPEPGQLIVLTDLTETRLLQKNLSHLQRLSA 136

Query: 126 LGRMVASLAHQVRTPLSSAMLYAANLAAPNLPPATRERFQSKLVDRLHDLEKQVNDMLLF 185
           LG+MVA+LAHQVRTPLS+A+LYAANLA+P L  + + +FQ KLVDRL++LE+QVNDMLL 
Sbjct: 137 LGKMVATLAHQVRTPLSAALLYAANLASPKLSDSAKVKFQQKLVDRLNELERQVNDMLLM 196

Query: 186 AKGGDNKVVMPFSIGDLAAEFMPMVETALKNNQIDYGQEVESEETMLLGNANALASALSN 245
           AKG  +++    ++ D+    +   E  +  +  +      +   ++L N NAL+SA++N
Sbjct: 197 AKGRQDELGELINLNDVIENVVANCEPIVAKHGAEL-TVTNASNGLMLANVNALSSAVNN 255

Query: 246 LVMNALQIAGKGSQIDVFFRPVNGELKISVQDNGPGVPESLQHKIMEPFFTTRSQGTGLG 305
           LVMN+L+     +QI +    ++ +L ++V DNG G+   +Q +++EPFFTT++QGTGLG
Sbjct: 256 LVMNSLEAG--ATQIQLVANEIDDQLHLNVVDNGKGLDAKMQQRVLEPFFTTKAQGTGLG 313

Query: 306 LAVVQMVCRAHGGRLELISKEGEGACFTMCIPLERQA 342
           LAVVQ V R HGG+L+L     +G   ++  P  + A
Sbjct: 314 LAVVQSVVRNHGGQLQLNCMPNKGCTVSLTFPQAKSA 350