Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., sensory box histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 93.6 bits (231), Expect = 2e-23
 Identities = 80/281 (28%), Positives = 135/281 (48%), Gaps = 40/281 (14%)

Query: 103  LITDLTETRLLQSRISDLQRLSSLGRMVASLAHQVRTPLSSAMLYAANLA-------APN 155
            L+ D+TE + +Q  +   +++ S+G + A +AH++  PL   +  A NLA       A N
Sbjct: 756  LVRDITEMKRMQEVMIQTEKMISVGGIAAGIAHEINNPLGIILQAAHNLAQRTRPDFAKN 815

Query: 156  LPPATRERF----------QSKLVDRLHDLEKQ-------VNDMLLFAKGGDNKVVMPFS 198
            L  ATR             Q KL   + D+          +  ML F++ G +K V P  
Sbjct: 816  LDVATRVGLDMDALRQYMAQRKLDVFIEDIRDAAVRASAIIRHMLDFSRSGGSKRV-PCD 874

Query: 199  IGDLAAEFMPMV--ETALKNN----QIDYGQEVESEETMLLGNANALASALSNLVMNALQ 252
            +  +  + + +   +  LK +    +I   ++ E+   ++  +   L   L NL+ NA  
Sbjct: 875  VTSILDKAVALAGSDYDLKKSYDFRRITITRDYEAGLPLVDCSPTELEQVLLNLLRNAAH 934

Query: 253  IA------GKGSQIDVFFRPVNGELKISVQDNGPGVPESLQHKIMEPFFTTR--SQGTGL 304
                    G+G  I +  R  +  + I VQDNGPG+P +LQ +I EPF+TT+    GTGL
Sbjct: 935  ALAESHRDGEGPAIHLRVRRQDETVVIDVQDNGPGIPVALQRRIFEPFYTTKPPGVGTGL 994

Query: 305  GLAVVQ-MVCRAHGGRLELISKEGEGACFTMCIPLERQADS 344
            GL+V   +V + HGG L +++    G  F + +PL+   ++
Sbjct: 995  GLSVSYFIVTKGHGGNLTVVTPPEGGTLFRIELPLQGSTEA 1035



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 44  REANPEAQRLLDVPLVGEKWYSVIQIAFAPRDDDGHEISLRNGRKVRLAISASTTGQLIL 103
           REA+ +    L  P++G     V ++AFA    DG E  L   +   LA      G L L
Sbjct: 581 READRKVMATLS-PMLGY----VERLAFA----DGRERMLETSKLPLLAADGRAVGVLGL 631

Query: 104 ITDLTET-------RLLQSRISDLQRLSSLGRMVASLAHQ 136
           I D+TE+       R  + R S L R S     +  +A Q
Sbjct: 632 IRDITESLAAQEQLRQSEERFSRLFRYSPEAMALVDMADQ 671