Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 803 a.a., sensor histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  104 bits (260), Expect = 7e-27
 Identities = 89/344 (25%), Positives = 173/344 (50%), Gaps = 23/344 (6%)

Query: 13  LDSLE--DQVERYKQVLDVMPAGV----ILLDTQGIVREANPEAQRLLD-VPLVGEKWYS 65
           LD+++  D + R   +LD +  G+    +LLD  G +  AN  A+R+   +P    +   
Sbjct: 456 LDNIDVLDNLLRQNTLLDSIFEGISDPLLLLDGHGAIVFANGSAERMAKAIPGGLPRLLD 515

Query: 66  VIQIAFAPRDDDGHEISLRNGRKVRLAIS--ASTTGQ---LILITDLTETRLLQSRISDL 120
              +  A  +    EI+L +GR   + +   A T G+   ++ + + T  + +  ++   
Sbjct: 516 DAGLPDAVAEPAQMEIALEDGRSFVINVYPLAQTHGRNRSVVYLRETTREKRMFDQMRQQ 575

Query: 121 QRLSSLGRMVASLAHQVRTPLSSAMLYAANLAAPNLPPATRERFQSKLVDRLHDLEKQ-- 178
           ++L+S+GR+ A LAH++  PL   M YA  L        ++ R    ++ R H L+ Q  
Sbjct: 576 EKLASVGRLAAGLAHEINNPLGVIMCYAELLQTQ--VGDSQARHDLDIILR-HTLQAQRV 632

Query: 179 VNDMLLFAKGGDNKVVMPFSIGDLAAEFMPMVETALKNNQIDYGQEVESEETMLLGNANA 238
           V D+L FA+  D +      I D+ ++ + +     + + ++   ++E +   +  + ++
Sbjct: 633 VRDLLDFARPKDTRCEA-CDINDVLSDIVEIFMPKARKSGVNVSLDLEPDLPRVYADRDS 691

Query: 239 LASALSNLVMNALQ-IAGKGSQIDVFFRPVNGELKISVQDNGPGVPESLQHKIMEPFFTT 297
           L    SNL++NAL  +  +   I +        + ++++DNGPG+PE+ + +I +PF+TT
Sbjct: 692 LGQVFSNLLLNALDAVPERTGTIAISTCGKGYGVTVTIRDNGPGIPEAHRDRIFDPFYTT 751

Query: 298 R--SQGTGLGLAVVQMVCRAHGGRLELISKEGEGACFTMCIPLE 339
           +   +GTGLGLAVV  + R   G +++     +GA F +  P +
Sbjct: 752 KETGRGTGLGLAVVYGIMRDLNGNIDV--STDDGATFILHFPAD 793