Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., sensory box histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 98.6 bits (244), Expect = 4e-25
 Identities = 96/367 (26%), Positives = 161/367 (43%), Gaps = 48/367 (13%)

Query: 13  LDSLEDQVERYKQVLDVMPAGVILLDTQGIVREANPEAQRLLDVPLVGEKWYSVI----- 67
           L++L    ER + + D +  G+ ++D    +  ANP   +   +  VG     ++     
Sbjct: 294 LEALSRSEERSRSITDNLAQGIAVIDPALRIEAANPRMLQWFGLDPVGMPLCRLLHDFCG 353

Query: 68  ----QIAFAP-----RDDDGHEISL-------RNGRKVRL-AISASTTGQ-----LILIT 105
               + +  P     RD   H+ S           R  RL A   ST GQ     +I++ 
Sbjct: 354 DGNSRCSGCPAIDVFRDGATHQRSFVLHLPGQPEERNFRLQACPISTQGQSVEAAVIMLD 413

Query: 106 DLTETRLLQSRISDLQRLSSLGRMVASLAHQVRTPLSSAMLYAANL--AAPNLPPATRER 163
           D T+   ++ +++  +RL +LG +   +AH++  PLS+  LYA  L       P   R+ 
Sbjct: 414 DETDRLRVERQLAQARRLEALGTLATGVAHEINQPLSALRLYAGGLEMLVEKRPVVDRDM 473

Query: 164 FQSKL------VDRLHDLEKQVNDMLLFAKGGDNKVVMPFSIGDLAAEFMPMVETALKNN 217
              +L       DR+ D+   +  M      GD +   P SI    AE   ++   L+N+
Sbjct: 474 LLERLSRILREADRIRDI---IEHMRALVTHGDIQ-CRPTSIAHACAEAFGLIGAQLRNH 529

Query: 218 QIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQ----IDVFFRPVNGELKI 273
            ID   ++  +   +L     L   L NL++NA+       Q    I V  R     + +
Sbjct: 530 GIDASLDIAPDLPDVLAVPVQLEQTLINLIVNAMHALDASRQPARDITVSARRHGNRVAL 589

Query: 274 SVQDNGPGVPESLQHKIMEPFFTTRS--QGTGLGLAVVQMVCRAHGGRLELISKE--GEG 329
           SV+DNGPG+   ++ ++ +PFFTT+    G GLGLA+V     + GG +   S+     G
Sbjct: 590 SVEDNGPGL-GLMEDRVFDPFFTTKDAHSGMGLGLALVHGFVESWGGTITAASRRPPRTG 648

Query: 330 ACFTMCI 336
           A FT+ +
Sbjct: 649 AVFTIML 655