Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., Two-component sensor CbrB: intrcellular carbon:nitrogen balance from Pseudomonas fluorescens FW300-N2E2

 Score =  288 bits (736), Expect = 4e-82
 Identities = 184/480 (38%), Positives = 273/480 (56%), Gaps = 50/480 (10%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +LIVED+  +R AL   L    Y+  EA   ++A  +    + D++VSD+++ G  G  L
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTEL 63

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY------- 120
           ++  +      PVL+MT+YA+++ AV +MK GA+DY+AKPF  + +L  V+R        
Sbjct: 64  IKLGQ----GTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQAA 119

Query: 121 ------------APVK---SDDNGD-AVVADTKSLK-LLALADKVAKTDANVMILGPSGS 163
                       A  K   S++NG+  ++     ++ L +   KVA TD+NV+I G SG+
Sbjct: 120 TSNPAEPAGKASASTKAGASNNNGEIGIIGSCPPMQDLYSKIRKVAPTDSNVLIQGESGT 179

Query: 164 GKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQ 223
           GKE+++R +HN S R + P I++NCAAIP++++E+ LFG+EKGAFTGA     G  E A 
Sbjct: 180 GKELVARALHNLSRRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEAAD 239

Query: 224 GGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGH 283
           GGT+ LDEI E+ L  QA+LLRVLQE E+ R+GS +S K+DVR++A ++RDLK   + G 
Sbjct: 240 GGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQ 299

Query: 284 FREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYP 343
           FREDLYYRL+V  L  PAL ER  D+  +A   + R   ++       AP+A   + +Y 
Sbjct: 300 FREDLYYRLHVIALKLPALRERGADVNEIAQAFLARQSARVNRTDLKFAPDAEQAIRHYA 359

Query: 344 WPGNVRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVA 403
           WPGNVREL+N V+RA+IL E+  I ++   L G+D   +    +   G    APQ     
Sbjct: 360 WPGNVRELENAVERAVILCESPEISAD---LLGIDIELSDLDDEEFIG---LAPQ----- 408

Query: 404 EPEVFKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTL 463
                    QGG  N++S        L D     +L+   +      E+A KLG+S + L
Sbjct: 409 ---------QGGAANNTSHEPTEDLSLEDYFQHFVLE--HQDHMTETELARKLGVSRKCL 457