Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Type IV fimbriae expression regulatory protein PilR from Pseudomonas fluorescens FW300-N2E2

 Score =  283 bits (724), Expect = 8e-81
 Identities = 166/473 (35%), Positives = 264/473 (55%), Gaps = 38/473 (8%)

Query: 4   AQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMG 63
           ++ ++LIV+D+  +RE L  TL     +   A    +A   L   + D+ ++D+++    
Sbjct: 5   SRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQNLLAGEAFDLCLTDMRLPDGT 64

Query: 64  GLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVS---RY 120
           GL L++ I+Q +P LPV ++TAY +++ A+ A+K GA D++ KP     L  +V+   R 
Sbjct: 65  GLELVQHIQQRYPQLPVAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRL 124

Query: 121 APVKSDDNG--DAVVADTKS-LKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASP 177
            PV +       +++ D+   L +    +K+A++ A V I G SG GKE+++R IH   P
Sbjct: 125 PPVATPGTTLERSLLGDSPPMLSVRKQIEKLARSQAPVYISGESGCGKELVARLIHEQGP 184

Query: 178 RKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDL 237
           R   PF+ +NC AIP  ++E+  FG+ KG+F+GA++  PG F+ A GGT+ LDE++++ L
Sbjct: 185 RANLPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPL 244

Query: 238 NLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPL 297
            +Q KLLR +QE+ V  +G ++   +DVR+L  +++DL   V AG FR+DLYYRLNV  L
Sbjct: 245 AMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIEL 304

Query: 298 TWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQR 357
             P L ER++DIE LANH+++R     G P   + P A+  L +Y +PGNVREL+N+++R
Sbjct: 305 RVPPLRERREDIELLANHMLQRLAANTGSPPVKLHPQALDALRSYRFPGNVRELENMLER 364

Query: 358 ALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQ 417
           A  L E   I+++ + L                G   A P                  G 
Sbjct: 365 AYTLCEQQQIEADDLRL--------------AEGNGSAEP------------------GN 392

Query: 418 NSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKM 470
               Q   L   L D E  +IL  L E +  R   A++L +S R++RY+L K+
Sbjct: 393 PDLMQVDNLEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKL 445