Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

 Score =  474 bits (1221), Expect = e-138
 Identities = 263/472 (55%), Positives = 327/472 (69%), Gaps = 19/472 (4%)

Query: 7   KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLA 66
           KVL+VEDD  LREAL DTL LAG+++     AE+ALL +   +  +VVSDV M GM G  
Sbjct: 4   KVLLVEDDRALREALADTLVLAGHDYAAVGSAEEALLAVGREAFSLVVSDVNMPGMDGHQ 63

Query: 67  LLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKSD 126
           LL  ++   P LPVLLMTA+  ++ AV AM+ GA DY+ KPF P+ LL++V+R+A     
Sbjct: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVARHALGSLA 123

Query: 127 DNGDAVVA-DTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIA 185
             G+  VA +  S +LL LA +VA++D+ V+I G SG+GKEV++RYIH  S R   PFIA
Sbjct: 124 VEGEGPVAIEPASAQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSRRASEPFIA 183

Query: 186 INCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLR 245
           INCAAIPDNMLEATLFG+EKG+FTGA+ A PGKFEQA GGTILLDEISEM + LQAKLLR
Sbjct: 184 INCAAIPDNMLEATLFGHEKGSFTGAIAAQPGKFEQADGGTILLDEISEMPMGLQAKLLR 243

Query: 246 VLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCER 305
           VLQEREVER+G+RK I LD+RV+AT+NRDL   V AG FREDLYYRL+VFPL W  L ER
Sbjct: 244 VLQEREVERVGARKPISLDIRVVATTNRDLASEVAAGRFREDLYYRLSVFPLAWRPLRER 303

Query: 306 KDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENG 365
             DI PLA  L+ +H  K+      ++  A   L+ YPWPGNVRELDN +QRALIL + G
Sbjct: 304 TADILPLAERLLNKHVNKMKHAAARLSAEARACLVAYPWPGNVRELDNAIQRALILQQGG 363

Query: 366 HIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSG 425
            IQ E   L G            VA   + A    P A    F P V+  G+++ +    
Sbjct: 364 LIQPEDFCLAG-----------PVACAPLPALSPVPAA---AFAPSVEVEGESAGA---- 405

Query: 426 LGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDI 477
           LG +LR +EF +I+DTL   +GRRKE AE+LGISPRTLRYKLA+MRDAG+D+
Sbjct: 406 LGDDLRRREFQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQMRDAGMDV 457