Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  283 bits (723), Expect = 1e-80
 Identities = 166/397 (41%), Positives = 237/397 (59%), Gaps = 34/397 (8%)

Query: 6   SKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGL 65
           S +LIVED+  +R AL   L    YE  EA   ++A  +      D++VSD+++ G  G 
Sbjct: 2   SHILIVEDETIIRSALRRLLERNQYEVSEAGSVQEAQERYSIPGFDLIVSDLRLPGAPGT 61

Query: 66  ALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKS 125
            L++  +      PVL+MT+YA+++ AV +MK GA+DY+AKPF  + +L  V+R   + S
Sbjct: 62  ELIKLAE----GTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQTVAR---ILS 114

Query: 126 DDNGDAVVADTKSLKLLALA------------------------DKVAKTDANVMILGPS 161
           D    A V    +    A A                         KVA TD+NV+I G S
Sbjct: 115 DHQQSAAVQAQPARSASATAAGSGRDDIGIIGHCAPMQDLFGKIRKVAPTDSNVLIQGES 174

Query: 162 GSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQ 221
           G+GKE+++R +HN S R + P I++NCAAIP+ ++E+ LFG+EKGAFTGA     G  E 
Sbjct: 175 GTGKELVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRAGLVEA 234

Query: 222 AQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQA 281
           A GGT+ LDEI E+ L  QA+LLRVLQE E+ R+GS +S K+DVR++A ++RDLK   + 
Sbjct: 235 ADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKTLAKT 294

Query: 282 GHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLN 341
           G FREDLYYRL+V  L  P L ER  D+  +A   + R  +++G      + +A   + +
Sbjct: 295 GQFREDLYYRLHVIALKLPPLRERGSDVLEIAKAFLARQGERMGSDDLHFSRDAEQAIRH 354

Query: 342 YPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVD 378
           Y WPGNVREL+N ++RA ILSE+  I +E   L G+D
Sbjct: 355 YSWPGNVRELENAIERAAILSESPEIDAE---LLGID 388