Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  298 bits (762), Expect = 3e-85
 Identities = 193/502 (38%), Positives = 271/502 (53%), Gaps = 77/502 (15%)

Query: 4   AQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMG 63
           AQ++VL+++DD  LR+AL  TL LAG +      A +   +L +    +VVSD++M G+ 
Sbjct: 9   AQTQVLLIDDDPHLRQALSQTLDLAGLKVASLGDARELAARLPADWPGVVVSDIRMPGID 68

Query: 64  GLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPV 123
           GL LL+ ++     LPV+L+T + +IQ AV AM+ GA D++ KPF  E LL+ V R   +
Sbjct: 69  GLELLQQLRARDSELPVILITGHGDIQLAVQAMRAGAYDFLEKPFPSEALLDSVRRALAL 128

Query: 124 KSDDNGDAVVADTKSLKLLALADK-----------------------VAKTDANVMILGP 160
           +       +V D +SL+L ALAD+                       +A T A+V+ILG 
Sbjct: 129 RQ------LVLDNRSLRL-ALADRQQLSARLLGQSKAMLRLREQIGALAGTQADVLILGE 181

Query: 161 SGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFE 220
           +G+GKEV++R +H+ S R+ GPF+AIN  A+ ++++E+ LFG+E GAFTGA +   GKFE
Sbjct: 182 TGAGKEVVARALHDLSNRRNGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFE 241

Query: 221 QAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQ 280
            A GGT+ LDEI  M L++Q KLLR+LQER VERLG  +SI LD+RV+A +  DL+    
Sbjct: 242 FANGGTLFLDEIESMSLDVQVKLLRLLQERVVERLGGNQSIALDIRVIAATKEDLRVAAD 301

Query: 281 AGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLL 340
            G FR DLYYRLNV PL  P L ER +DI  L  H  E   ++ GLP+  + P     LL
Sbjct: 302 QGRFRADLYYRLNVAPLGIPPLRERNEDILLLFQHFAEAGAQRHGLPIRELQPEQRAALL 361

Query: 341 NYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIK 400
            + WPGNVREL N  +R  +                              G  +   Q  
Sbjct: 362 RHAWPGNVRELQNTAERFAL------------------------------GLGLGLDQ-- 389

Query: 401 PVAEPEVFKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISP 460
           P AEP            +S + +  L  ++   E A+I   L    G  + +AE LG+  
Sbjct: 390 PGAEP-----------TSSVAGTGNLSEQVEAFERALIAAELNRPHGSLRSVAEALGVPR 438

Query: 461 RTLRYKLAK----MRDAGIDIP 478
           +TL  KL K      DAG   P
Sbjct: 439 KTLHDKLRKHGLNFSDAGGSSP 460