Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  284 bits (727), Expect = 4e-81
 Identities = 166/412 (40%), Positives = 241/412 (58%), Gaps = 29/412 (7%)

Query: 66  ALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKS 125
           A + ++ +   N+ V+ +  YA+ + A + ++ G +DY+  PF+   L  ++ R    ++
Sbjct: 86  AQVEALTRRARNVSVIPVVEYADQEKAAALLEIGCVDYLLSPFSEAQLAALLRRQVCAET 145

Query: 126 DDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIA 185
                 V       +LLA+A +V+ T A ++I G +G+GKE+M+RYIH  S   + PFIA
Sbjct: 146 AQES-FVSCSQAGRRLLAMAQRVSLTRAPILITGETGTGKELMARYIHRFSASPDAPFIA 204

Query: 186 INCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLR 245
           +NCAAIP+ MLE+ LFG+EKGAFTGAV A PGKFE A GGT+LLDEI E+ L LQAKLLR
Sbjct: 205 VNCAAIPEQMLESILFGHEKGAFTGAVSAQPGKFELANGGTLLLDEIGELPLGLQAKLLR 264

Query: 246 VLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCER 305
           VLQE+ VERLG R+ I+L+VR++A +NRDL+Q V  G FR DL +RL+V PL    L ER
Sbjct: 265 VLQEQRVERLGGRREIELNVRIIAATNRDLQQEVAEGRFRADLMFRLDVLPLHISPLRER 324

Query: 306 KDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENG 365
           K+D+ PLA   I ++  +       +  +A   LL + WPGN REL+N VQRAL+L    
Sbjct: 325 KEDVLPLARRFIGKYAPQEAHD-ELLTEDACRALLQHDWPGNARELENTVQRALVLRNGL 383

Query: 366 HIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSG 425
            IQ + +                     +AAP     A   V KPL       + +  + 
Sbjct: 384 FIQPQDL--------------------GLAAP---AAASVRVEKPLTLA----AENGKAA 416

Query: 426 LGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDI 477
           L    +  E+  ++DT+    G + + A  LG++ R LRY+L  MR+ GI++
Sbjct: 417 LRASGKWAEYQHVIDTIRRFDGHKTKAAASLGMTSRALRYRLNAMREQGIEL 468