Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  279 bits (714), Expect = 1e-79
 Identities = 170/485 (35%), Positives = 265/485 (54%), Gaps = 40/485 (8%)

Query: 2   KMAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAG 61
           ++ Q +VL+VEDD+ LR+ L++ L   G +      AE+A+  L+S    +VVSD+++ G
Sbjct: 3   EVTQERVLLVEDDDSLRQLLVEELEDRGLQVRALASAEEAVGSLESWEPALVVSDLRLPG 62

Query: 62  MGGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEV--------- 112
             G+ALLR +K        L++TA+ +IQ AV+A+K+GA +++ KP   E          
Sbjct: 63  ADGMALLRRVKSMQAAPAFLVITAFGSIQQAVAALKEGADEFLTKPLDLEHFGLAVARAL 122

Query: 113 ----LLNMVSRYAPVKSDDNGDAVVADTKSLK-LLALADKVAKTDANVMILGPSGSGKEV 167
               L + V R+  + SDD    ++  ++ ++ L     ++A+ +  V+++G SG+GKE+
Sbjct: 123 ETRRLRDEVRRFQQLLSDDRFHGMLGRSRVMRGLFDQIRQLARAEGPVLVIGESGTGKEL 182

Query: 168 MSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTI 227
           ++R +H  S R   PF+AINCA +P  +LE+  FG+  GAFTGA +A  G F+QA GGT+
Sbjct: 183 VARAVHAESERANRPFLAINCAGLPAELLESEFFGHVAGAFTGANRAHKGLFQQADGGTL 242

Query: 228 LLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFRED 287
            LDEI EM L LQAKLLRVLQE  +  +G+ + + +DVR++A SNR L+       FRED
Sbjct: 243 FLDEIGEMPLPLQAKLLRVLQEGTIRPVGAERELTVDVRIIAASNRPLETEAGREAFRED 302

Query: 288 LYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGN 347
           L++RL  F L  P L +R++D+E LA   +     + G PV  +AP  + +L  YP+PGN
Sbjct: 303 LFFRLETFILQVPPLRDREEDLELLAAGFVAHFAARSGRPVRGLAPAVLAQLRRYPFPGN 362

Query: 348 VRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEV 407
           VREL N ++RA+       I+ EH+     D+ D ++  ++   E +A     P+     
Sbjct: 363 VRELQNAIERAVTFCHGRSIELEHLPSRIADYRDDNA--RSAGAELLAQLSDGPLLP--- 417

Query: 408 FKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKL 467
                                 L + E   I   L    G ++  A  LGI  RTL  +L
Sbjct: 418 ---------------------TLEELELRYIEHVLKLVDGNKRRAAALLGIGRRTLYRRL 456

Query: 468 AKMRD 472
            +  D
Sbjct: 457 GERED 461