Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  469 bits (1206), Expect = e-136
 Identities = 259/474 (54%), Positives = 322/474 (67%), Gaps = 20/474 (4%)

Query: 6   SKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGL 65
           +K+L+VEDD  LREAL  TL L GY +   D AE AL  L+     +VVSDV M GM G 
Sbjct: 3   AKILLVEDDRALREALGITLELGGYAYRAVDSAEAALSALQQDMFSLVVSDVNMPGMDGH 62

Query: 66  ALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY--APV 123
            LL  I++ +P +PVLLMTA+  +  AV AM++GAIDY+ KPF P  LL ++ R+    +
Sbjct: 63  ELLALIRKRYPQIPVLLMTAFGAVARAVDAMREGAIDYLVKPFEPNTLLELLRRHINGAL 122

Query: 124 KSDDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPF 183
            + D    V  D  S +LL LA +VA++D+ V+I G SG+GKEV++RYIH  SPR + PF
Sbjct: 123 DAADAEGPVACDASSQQLLGLARRVAQSDSTVLIFGESGTGKEVLARYIHQQSPRSKRPF 182

Query: 184 IAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKL 243
           IAINCAAIPDNMLEATLFG+EKGAFTGA+ + PGKFEQA GGT+LLDEISEM L LQAKL
Sbjct: 183 IAINCAAIPDNMLEATLFGHEKGAFTGAIASQPGKFEQADGGTLLLDEISEMPLGLQAKL 242

Query: 244 LRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALC 303
           LRVLQEREVER+G R+ I LD+RVLAT+NRDL   V AG FREDLYYRL+VFPL+W  L 
Sbjct: 243 LRVLQEREVERVGGRRPITLDIRVLATTNRDLVGEVAAGRFREDLYYRLSVFPLSWSPLR 302

Query: 304 ERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSE 363
           +R  DI PLA  L+    +K+      ++  A   LL +PWPGNVRELDN +QRALIL +
Sbjct: 303 QRPADILPLAERLLASRARKMRQGSAQLSAAAQRCLLGHPWPGNVRELDNAIQRALILQQ 362

Query: 364 NGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQS 423
            G IQ E + L GV               S  A    PVA  +    L+  G + S    
Sbjct: 363 GGLIQPEDLCLSGV---------------SNVASLPTPVAVAQTPSDLITEGPRES---C 404

Query: 424 SGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDI 477
           S LG +LR +EF +I+DTL   +GRRKE A++LGIS RTLRYKLA+MRDAG+D+
Sbjct: 405 SALGDDLRRREFQLIIDTLRAERGRRKETADRLGISARTLRYKLAQMRDAGMDV 458