Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  281 bits (719), Expect = 3e-80
 Identities = 182/489 (37%), Positives = 260/489 (53%), Gaps = 73/489 (14%)

Query: 4   AQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMG 63
           +Q +V++++DD  LR+AL  TL LAG   L    A     ++      +VVSD++M GM 
Sbjct: 9   SQIQVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMD 68

Query: 64  GLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPV 123
           GL LL  +    P+LPVLL+T + ++  AV AM+ GA D++ KPFA + +L+ V R   +
Sbjct: 69  GLELLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALAL 128

Query: 124 KSDDNGDAVVADTKSLKLLALADK-----------------------VAKTDANVMILGP 160
           +       +V D +SL+L AL+D+                       +A T A+V+ILG 
Sbjct: 129 RR------LVLDNRSLRL-ALSDRQQLSTRLIGQSPPILRLREQIGALAGTRADVLILGE 181

Query: 161 SGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFE 220
           +G+GKEV++R +H+ S R+ GPF+AIN  A+ ++++E+ LFG+E GAFTGA +   GKFE
Sbjct: 182 TGAGKEVVARALHDLSNRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFE 241

Query: 221 QAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQ 280
            A GGT+ LDEI  M L++Q KLLR+LQER VER+GS + I LD+R++A +  DL+    
Sbjct: 242 FANGGTLFLDEIESMSLDVQVKLLRLLQERVVERMGSNQQIPLDIRIIAATKEDLRHAAD 301

Query: 281 AGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLL 340
            G FR DLYYRLNV  L  P L ER +D   L  H  +    + G+P   + P     LL
Sbjct: 302 QGRFRADLYYRLNVASLRIPPLRERGEDALMLFEHYADAASMRHGIPKHELKPGQRALLL 361

Query: 341 NYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIK 400
            + WPGNVREL N  +R                        A  L+  +  E + A Q  
Sbjct: 362 RHNWPGNVRELQNAAERF-----------------------ALGLELELEPEGVDAEQAP 398

Query: 401 PVAEPEVFKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISP 460
           P            GG         GL  ++   E A+I   LA      + +AE LG+  
Sbjct: 399 P-----------PGG---------GLSDQVESFERALIAAELARPHSSVRSLAEALGVPR 438

Query: 461 RTLRYKLAK 469
           +TL  KL K
Sbjct: 439 KTLHDKLRK 447