Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  470 bits (1210), Expect = e-137
 Identities = 259/473 (54%), Positives = 330/473 (69%), Gaps = 16/473 (3%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           VL+VEDD  LREAL +TL LAGY++     AE+AL+  ++    +V+SDV M GM G  L
Sbjct: 5   VLLVEDDRSLREALGETLELAGYDYKAVGSAEEALVAAEATPFSLVISDVNMPGMDGHQL 64

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYA--PVKS 125
           L  ++   P LPVLLMTA+  ++ AV AM+ GA DY+ KPF P+ L+ +V+R+A   ++ 
Sbjct: 65  LSLLRSRHPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIALVARHALGRLEP 124

Query: 126 DDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIA 185
            +    +  +  S++LL LA +VAK+D+ V+I G SG+GKEV++R+IH  SPR + PFIA
Sbjct: 125 AERDGPIAVEPASIQLLNLASRVAKSDSTVLISGESGTGKEVLARFIHQNSPRADKPFIA 184

Query: 186 INCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLR 245
           INCAAIPDNMLEATLFG+EKG+FTGA+ A  GKFEQA GGTILLDEISEM L LQAKLLR
Sbjct: 185 INCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLDEISEMPLGLQAKLLR 244

Query: 246 VLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCER 305
           VLQEREVER+G+RK I LD+RV+AT+NRDL   V AG FREDL+YRL+VFPL W AL +R
Sbjct: 245 VLQEREVERVGARKPIVLDIRVVATTNRDLAGEVAAGRFREDLFYRLSVFPLAWQALRQR 304

Query: 306 KDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENG 365
             DI PLA  L+ +H  K+      ++  A   L++YPWPGNVRELDN VQRALIL + G
Sbjct: 305 TADILPLAERLLAKHVNKMKHAPVRLSAEAQQCLVSYPWPGNVRELDNAVQRALILQQGG 364

Query: 366 HIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSG 425
            IQ++   L G      +SL  A + E+  A     VAE           G   S +S G
Sbjct: 365 VIQAQDFCLSG----PVTSLPVAASVEAAVAVTGTTVAE---------NAGAGVSPESVG 411

Query: 426 -LGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDI 477
            LG +LR  EF +I+DTL   +GRRKE AE+LGISPRTLRYKLA+MRDAG+D+
Sbjct: 412 ALGDDLRRHEFQMIIDTLRSERGRRKEAAERLGISPRTLRYKLAQMRDAGMDV 464