Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., nitrogen assimilation regulatory protein from Sinorhizobium meliloti 1021

 Score =  285 bits (729), Expect = 2e-81
 Identities = 179/486 (36%), Positives = 273/486 (56%), Gaps = 20/486 (4%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           M  + +L+ +DD  +R  L   L+ AGY+      A      + +   D+VV+DV M   
Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYA- 121
               LL  IK+  P+LPVL+M+A      A+ A + GA DY+ KPF    L+ ++ R   
Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120

Query: 122 -----PVKSDDN---GDAVVADTKSLK-LLALADKVAKTDANVMILGPSGSGKEVMSRYI 172
                P K +D+   G  +V  + +++ +  +  ++ +TD  +MI G SG+GKE+++R +
Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180

Query: 173 HNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEI 232
           H+   R+ GPF+AIN AAIP +++E+ LFG+EKGAFTGA     G+FEQA+GGT+ LDEI
Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240

Query: 233 SEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRL 292
            +M ++ Q +LLRVLQ+ E   +G R  I+ DVR++A +N+DLKQ +  G FREDLYYRL
Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300

Query: 293 NVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELD 352
           NV PL  P L +R +DI  L  H +++  +K GL V      A+  +  +PWPGNVREL+
Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELE 359

Query: 353 NVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLV 412
           N+V+R   L     I  E I  E       S +++A A     +  I    E  + +   
Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLS--ISQAVEENMRQYFA 417

Query: 413 QGGGQNSSSQSSGLGGE-LRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMR 471
             G    +   SGL    L + E+ +IL  L   +G + + A+ LG++  TLR    K+R
Sbjct: 418 SFG---DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR---KKIR 471

Query: 472 DAGIDI 477
           + G+ +
Sbjct: 472 ELGVSV 477