Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  545 bits (1405), Expect = e-160
 Identities = 289/476 (60%), Positives = 354/476 (74%), Gaps = 31/476 (6%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           M + ++L+VEDD  LREAL+DTL LA ++ +    AE+A+L LK    D+V+SDVQM G+
Sbjct: 1   MPEGRLLLVEDDASLREALLDTLMLAQFDCVALPSAEEAILALKESRFDMVISDVQMEGI 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAP 122
           GG+ LL  ++Q+ P +P+LLMTA+A I  AVSA+K GA+DY+AKPF+PEVLLN VSRY P
Sbjct: 61  GGMGLLAYLRQYHPKVPLLLMTAFATIDSAVSAIKLGAVDYLAKPFSPEVLLNQVSRYMP 120

Query: 123 VKSDDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGP 182
            ++D  G  VVAD +S  LLALA +VAK++A+VMILGPSGSGKEV++RYIH  S R +GP
Sbjct: 121 AQAD-TGAPVVADERSQALLALAGRVAKSEASVMILGPSGSGKEVLARYIHKQSLRSDGP 179

Query: 183 FIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAK 242
           F+AINCAAIP+NMLEATLFGYEKGAFTGA QACPGKFEQAQGGT+LLDEISEMDL LQAK
Sbjct: 180 FVAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEISEMDLGLQAK 239

Query: 243 LLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPAL 302
           LLRVLQEREVERLG RK+IKLDVRVLATSNR+LK   + G FREDLYYR+NVFPLTWPAL
Sbjct: 240 LLRVLQEREVERLGGRKTIKLDVRVLATSNRELKAMAERGDFREDLYYRINVFPLTWPAL 299

Query: 303 CERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILS 362
            +R  DI PLA HL+ RH ++LG  VP     A  +LL + WPGNVRELDNVVQRALILS
Sbjct: 300 NQRPKDILPLARHLLARHAERLGTEVPEFDEAACRRLLAHRWPGNVRELDNVVQRALILS 359

Query: 363 ENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQ 422
               I  + I+++ +D    +  + AV             AEPE                
Sbjct: 360 AGVKIGVQDIIIDAMDVTQITQEETAVK------------AEPE---------------- 391

Query: 423 SSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDIP 478
             GLG EL+ QE  IIL+TL++C+G RK +AE+LGIS RTLRYK+A+MR+ GI +P
Sbjct: 392 --GLGDELKAQEHVIILETLSQCRGSRKLVAERLGISARTLRYKMARMREMGIQLP 445