Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  308 bits (788), Expect = 3e-88
 Identities = 171/410 (41%), Positives = 249/410 (60%), Gaps = 27/410 (6%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +L+VED+ G RE ++  L   GY   EADC E A++ +K+ + D+V SD ++  + G+ L
Sbjct: 5   ILVVEDEPGQRELIVGMLKTEGYRLREADCVEAAIVSIKADTPDLVFSDWKLGQLSGMDL 64

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKS-- 125
           L  +K+ +P++  ++ TAY  I  AV A++ GA DY+ KP+  + LL  +S+ A  ++  
Sbjct: 65  LNYVKREFPDVGFIMATAYGTITHAVDAIQAGADDYLTKPYQRQALLLAISKVARSQALR 124

Query: 126 DDNGDAVVADTKSLKLLALADK-------------VAKTDANVMILGPSGSGKEVMSRYI 172
            +N    +A ++   L+ L  K             ++ TDA V+I G SG+GKE+ +R +
Sbjct: 125 KENKALSLALSEQQSLVGLVGKAPCMQGVFDRISRISGTDATVLIGGESGTGKELAARAL 184

Query: 173 HNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEI 232
           H  S R   PFIAINC AIP+N+ EA LFG EKGAFTGA     GK E A GGT+ LDEI
Sbjct: 185 HQLSRRAHMPFIAINCGAIPENIAEAELFGAEKGAFTGATALKLGKLEAAHGGTVFLDEI 244

Query: 233 SEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRL 292
            E+ L  Q KLLR LQE  + R+G++K ++LDVRV+A ++RDL+  V    FREDL+YRL
Sbjct: 245 GELPLLQQTKLLRFLQEGTITRVGAQKELQLDVRVIAATHRDLRLEVAEARFREDLFYRL 304

Query: 293 NVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELD 352
           NV P+  P L ER++DI  L  H ++ H  + G   P I+P A+  LL+Y WPGNVREL 
Sbjct: 305 NVVPVLMPPLRERREDIGRLVEHFLKLHASQYGFDQPKISPTALRFLLDYRWPGNVRELS 364

Query: 353 NVVQRALILSENGHIQ--SEH--------ILLEGVDWH--DASSLQQAVA 390
           N ++R ++L +   +   SEH        +  EG++W   +A  L QA+A
Sbjct: 365 NRIERFVLLGDEAELMQVSEHASKEPGLQLPDEGIEWEAFEARCLSQAMA 414