Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  298 bits (763), Expect = 3e-85
 Identities = 176/400 (44%), Positives = 242/400 (60%), Gaps = 36/400 (9%)

Query: 79  PVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKSDDNGDAVVADTKS 138
           PV+      + Q AV A+K GA +Y+  P  PE++  ++       ++++   V  D   
Sbjct: 72  PVVAYGVGTDTQAAVRAIKAGAREYIPLPPDPELIAAVLEAV----TEESHALVYKDPAM 127

Query: 139 LKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEA 198
             L+ +A+++A +DA+V+I+G SG+GKE+++R+IH  S R +G FIA+NCAAIP+ +LE+
Sbjct: 128 GALVRMAEQIAPSDASVLIVGESGTGKEIIARHIHRKSRRAQGRFIAVNCAAIPEALLES 187

Query: 199 TLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSR 258
            LFG+EKGAFTGAV    GKFE+A GGT+LLDEISEMD+ LQAKLLRVLQERE++R+G R
Sbjct: 188 ELFGHEKGAFTGAVARRLGKFEEANGGTLLLDEISEMDVRLQAKLLRVLQEREIDRVGGR 247

Query: 259 KSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIE 318
           + IK+DVR+LATSNRD++  V+AGHFREDL++RLNV  L  P L +R  DI+ LA+H   
Sbjct: 248 QPIKVDVRILATSNRDMEAEVRAGHFREDLFFRLNVITLALPPLRKRPADIDLLADHFAR 307

Query: 319 RHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVD 378
           +     G+P   +A      L  + W GNVREL+N + RA++LS    I  E ILL G D
Sbjct: 308 KFADLNGVPYRPLADETRQSLRGHSWRGNVRELENTLHRAVLLSSGPRILPEAILLTGGD 367

Query: 379 WHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSGLGGELRDQEFAII 438
                    A AGE                          S+   S +G  + D E  +I
Sbjct: 368 ------TANAPAGE--------------------------STLTGSLVGRTVADVERDLI 395

Query: 439 LDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDIP 478
           +DTL    G R   A  LGIS RTLR KL +  + GI +P
Sbjct: 396 IDTLRHTLGNRTHAATILGISIRTLRNKLKQYTEEGIPVP 435