Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25-INTG

 Score =  467 bits (1201), Expect = e-136
 Identities = 255/473 (53%), Positives = 323/473 (68%), Gaps = 27/473 (5%)

Query: 7   KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLA 66
           KVL+VEDD  LREAL DTL LAG+++     AEDAL  ++  S  +VVSDV M GM G  
Sbjct: 4   KVLLVEDDRALREALADTLLLAGHDYRAVGSAEDALEAVEQESFSLVVSDVNMPGMDGHQ 63

Query: 67  LLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYA--PVK 124
           LL  ++   P LPVLLMTA+  ++ AV AM+ GA DY+ KPF P+ L+ +V+R+A   + 
Sbjct: 64  LLSLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIELVARHALGVIP 123

Query: 125 SDDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFI 184
           + D    +  +  S +LL LA +VA++D+ V+I G SG+GKEV++RYIH  S R + PFI
Sbjct: 124 ASDGEGPIAFEPASAQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSTRAKQPFI 183

Query: 185 AINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLL 244
           AINCAAIPDNMLEATLFG+EKG+FTGA+ A  GKFEQA GGTILLDEISEM L LQAKLL
Sbjct: 184 AINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLDEISEMPLGLQAKLL 243

Query: 245 RVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCE 304
           RVLQEREVER+G+RK I+LD+RV+AT+NRDL   V AG FREDL+YRL+VFPL W  L E
Sbjct: 244 RVLQEREVERVGARKPIQLDIRVVATTNRDLAGEVAAGRFREDLFYRLSVFPLAWRPLRE 303

Query: 305 RKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSEN 364
           R  DI PLA  L+  H KK+      ++  A   L++YPWPGNVRELDN +QRALIL + 
Sbjct: 304 RPADIIPLAERLLNNHVKKMKHAQARLSAEAQACLISYPWPGNVRELDNAIQRALILQQG 363

Query: 365 GHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSS 424
           G IQ +   L             A+   +   P + P        P+V       +  + 
Sbjct: 364 GLIQPQDFCL-------------AMGSGAAPLPTLAPA-------PIVA-----ETETAG 398

Query: 425 GLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDI 477
            LG +LR +EF +I+DTL   +GRRKE AE+LGISPRTLRYKLA+MRDAG+D+
Sbjct: 399 ALGDDLRRREFQMIIDTLRSERGRRKEAAERLGISPRTLRYKLAQMRDAGMDV 451